FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70759
Sequences flagged as poor quality0
Sequence length69-587
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT2886640.79481055413446No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT966613.660453087239786No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT714010.090589183001455No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT51527.28105258695007No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC39785.62189968767224No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC27903.9429613194081314No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT14622.06616826128125No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC12841.8146101555985812No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC11441.6167554657358074No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG10781.523481111943357No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG3220.45506578668437936No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG2650.37451066295453583No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG2330.3292867338430447No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG2050.28971579587048996No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC1950.275583318023149No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG1720.24307861897426478No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG1410.19926793764750775No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTCAG1220.17241622973755988No Hit
GAATTCTCACAGGNGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC1170.1653499908138894No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT920.13001879619553697No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAAGGGTTGGGGCGGATGCACTCC890.12577905284133467No Hit
TTGCAGCAGCGGGTCAAGGGGAAGACGGATGGGCTCTGTGTGGAGGCTGA890.12577905284133467No Hit
CGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAGGAGACGGTGACCAGGG850.12012606170239828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)