FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84211
Sequences flagged as poor quality0
Sequence length70-597
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT3406940.45670993100664No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT1042512.37961786464951No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT77919.25176045884742No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT75728.991699421690754No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC43365.148971037037916No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC36574.342663072520217No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC16751.9890513115863724No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC16211.9249266722874685No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG14191.6850530215767534No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT13471.5995535025115484No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG8290.9844319625702105No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG3260.3871228224341238No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG3140.37287290258992295No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG2590.3075607699706689No Hit
TTGCAGCAGCGGGTCAAGGGGAAGACGGATGGGCTCTGTGTGGAGGCTGA2270.2695609837194666No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG2140.25412357055491563No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC2030.24106114403106482No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAAGGGTTGGGGCGGATGCACTCC1550.18406146465426132No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG1200.14249919844200876No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAGGCGAGGTGGGGGTCTGAG1140.13537423851990835No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT1080.12824927859780788No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCTGTGGCTACACTGCCC1020.12112431867570746No Hit
GAATTCTCACAGGNGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC870.10331191887045636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)