FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002253647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002253647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23840
Sequences flagged as poor quality0
Sequence length62-589
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT991741.5981543624161No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGGT377915.851510067114095No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTT22459.416946308724834No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTGT16596.958892617449665No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCGTGGTC15476.4890939597315445No Hit
GAATTCTCACAGGAGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC7893.309563758389262No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACAGTGACCAGGGT4191.7575503355704698No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGG3671.5394295302013423No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAAGAGACGGTGACCATTGTC3621.518456375838926No Hit
TGTCTGCACCCTGATATGATGGGGAACACATCCGGAGCCTTGGTGGGTGC2881.2080536912751678No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCGTGG1360.5704697986577181No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCATGTCGGGCGCCTGGTCACTG1000.41946308724832215No Hit
CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAG850.3565436241610738No Hit
GGGAAAAAGGGTTGGGGCGGATGCACTCCCTGAAGAGACGGTGACCATTG690.28942953020134227No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACAGTGACCAGGGTG670.28104026845637586No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTTTTAGGGGTCTGGGAAGGGC640.2684563758389262No Hit
GGAACACATCCGGAGCCTTGGTGGGTGCTGAGGAGACGGTGACCAGGGTG490.20553691275167785No Hit
GAATTCTCACAGGNGACGAGGGGGAAAAGGGTTGGGGCGGATGCACTCCC290.12164429530201343No Hit
GGGAAAAGGGTTGGGGCGGATGCACTCCCTGAGGACCCGCAGGACAAAAG270.11325503355704698No Hit
GGGAAAAAGGTTGGGGCGGATGCACTCCCTGAGGAGACGGTGACCAGGGT250.10486577181208054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)