FastQCFastQC Report
Sat 11 May 2024
EGAF00002258420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002258420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47447627
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG620940.13086850476210327No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT542590.11435556092194031No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA481820.10154775495937868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)