FastQCFastQC Report
Fri 5 May 2023
EGAF00002271361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002271361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18316330
Sequences flagged as poor quality0
Sequence length66
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAG845160.46142431371350046No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT517300.2824255732452953No Hit
GTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAG286250.1562813074453234No Hit
TTAACTAATACGTCTATTTTCTTCAGATTCTGCAGTAGCTCTTTAAAAGCACAGCGGTTGGATAGC244470.1334710610695483No Hit
TAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGG191560.10458426988375948No Hit
GATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAA191300.10444232004992267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)