FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002271490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002271490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23218049
Sequences flagged as poor quality0
Sequence length66
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAG852660.3672401587230693No Hit
ATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCCTTGCCTCTC530890.22865400964568555No Hit
ATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGA398060.17144420704771535No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCC388290.1672362738143933No Hit
CAGTGGACTCAGAAAGCCAACATGTGGCTCCTCCCAGCCCATAACCAGTATTTTTGCTGCTTCTGA381270.16421276395790188No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT375410.16168886541672817No Hit
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAG276930.11927358754389743No Hit
GTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAA235410.10139094805080306No Hit
CCTTCAGTGCGAAGAGCCACATCCAGGCCTGAGGGCGGCACCCCAGCCCTGCCCTTGCTTCCTTCA235260.10132634313933958No Hit
CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAG233560.10059415414275334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)