FastQCFastQC Report
Thu 16 Mar 2023
EGAF00002273177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002273177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87226671
Sequences flagged as poor quality0
Sequence length16-125
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACGGCGCCGGACGCGCACGCCCCGCCGGGCCCCCCGCACGCACGCGC1780710.20414742183614917No Hit
GACGAACGGAAGGACGGACGGCGCCGGACGCGCACGCCCCGCCGGGCCCC1277940.14650794136119216No Hit
GGAAGACGAACGGAAGGACGGACGGCGCCGGACGCGCACGCCCCGCCGGG1192160.1366737932713264No Hit
CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA1077740.12355624577258027No Hit
CTAGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTCT979890.11233834660501947No Hit
ACTAGGCACTCGCATTCCACGCCCGGCTCCACGCCAGCGAGCCGGGCTTC898050.10295589522154297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)