FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002273197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002273197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36528889
Sequences flagged as poor quality0
Sequence length16-125
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC583450.15972289767695919No Hit
GGAAGACGAACGGAAGGACGGACGGCGCCGGACGCGCACGCCCCGCCGGG548940.1502755805138229No Hit
GACGAACGGAAGGACGGACGGCGCCGGACGCGCACGCCCCGCCGGGCCCC481850.1319092951335038No Hit
CGGACGGCGCCGGACGCGCACGCCCCGCCGGGCCCCCCGCACGCACGCGC435630.11925629602367596No Hit
GTGCGGGGGGCCCGGCGGGGCGTGCGCGTCCGGCGCCGTCCGTCCTTCCG384200.10517702851570439No Hit
CCGGGAGGGAGGAAGACGAACGGAAGGACGGACGGCGCCGGACGCGCACG366080.10021657105421411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)