FastQCFastQC Report
Wed 14 Sep 2022
EGAF00002273201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002273201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20138397
Sequences flagged as poor quality0
Sequence length16-125
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG1218240.6049339478211697No Hit
TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA840690.4174562652628211No Hit
CAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAAC448540.22272875045615598No Hit
TGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAA392240.1947722055534013No Hit
GTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAAT282300.1401799755958729No Hit
GATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCG278820.13845193338873993No Hit
GTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTC277780.13793550698201054No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT267210.13268682705977045No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC243680.12100267960751793No Hit
CCTGCCAGTAGCGTATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG222920.11069401402703503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)