FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002287306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002287306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1186504
Sequences flagged as poor quality0
Sequence length35-301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGCTTCAATCTCGTAT301302.5393930403943012TruSeq Adapter, Index 10 (97% over 39bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN22000.18541867536898315No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGGCTTCAACCTCGTAT12880.10855420630693197TruSeq Adapter, Index 10 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)