FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002287337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002287337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4390386
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG139110.3168514112426561Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN78160.17802534902398104No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)