FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002294221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112
Sequences flagged as poor quality0
Sequence length75
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACCTGTCTCTTATACACATCTCCGAGCCCACGAG32.6785714285714284No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTCTCTTATACACATCT32.6785714285714284No Hit
GTACATGGGGGTGTCGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTTCTCATTCACCTG21.7857142857142856No Hit
TTTTTCGGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCCCCTCCCCATGTACTCTGCGTTGATCTGTCTCTT10.8928571428571428No Hit
GTCAATATCCAACACAGCCAACCTACCCTGTGCAGCCTCCTGGGAATCCAGTATACCCTCAGACCTTGCATCTTC10.8928571428571428No Hit
CTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTC10.8928571428571428No Hit
GCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCATGTACTCTGCGTTGATCTGTCTCTTATACACATCTCCG10.8928571428571428No Hit
GGTCCAGGCCCAGCTTGATGTGCAGCGGCACACCGGTGGCAGCCCCATGTACCTGTCTCTTATACACATCTCCGA10.8928571428571428No Hit
TTCTGACTGTGAATGAGAACCTGTACTTCCAGAGCGGAAGCGAGCCCAAGAGCTGCGACAAGACCCACACCCCCA10.8928571428571428No Hit
GGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACCTGTCTCTTATACACATCTCCGAGCC10.8928571428571428No Hit
GACAGTCGCTACGGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACC10.8928571428571428No Hit
ACGCAGAGTACATGGGCGGCAGTGCAGCAGTAGATTTATGTACTATACAAGCAGTCTCTCTGCTTCCAGGCTGTC10.8928571428571428No Hit
GCAGAGACTTGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTCTGTCTCTTA10.8928571428571428No Hit
CCTTCTGACTGTGAATGAGAACCTGTACTTCCAGAGCGGAAGTGAGCCCAAGAGCTGCGACAAGACCCACACCCC10.8928571428571428No Hit
GACCAATCCGGCCAAGCTCCCGGTGAGCCCTGATAAGACCGAAGATTTGTAGATCTCGGCGTTGAAGCCCTTCGG10.8928571428571428No Hit
GAACCGAGCCTCTGTCTTTCGGCCTCCTCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGC10.8928571428571428No Hit
GCAGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.8928571428571428TruSeq Adapter, Index 25 (96% over 27bp)
GTACATGGGGGTGTGGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTTCTCATTCACCTG10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCCTGTCTCTTATACACATCTCCGAGCCCAC10.8928571428571428No Hit
ATCAACGCAGAGTACATGGGGGGGGGACACTTTCGGACATCTGGTCGACCTCCAGCCTGTCTCTTATACACATCT10.8928571428571428No Hit
GAAAGACAGAGGCTCGGTTCCGAGCAGCCCCGTACCGACTCTCTTTCGGCCTCCTCCAAATTTAATCTGAGATGA10.8928571428571428No Hit
GAATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCCCATGTACCTGTCTCTTATACACATCTCCG10.8928571428571428No Hit
GGGTTGTTAGAGCCTTCTCCCTATAGTGAGTCGTATTACTGCCCATGTACTCTGCGTTGATACCTGTCTCTTATA10.8928571428571428Clontech Universal Primer Mix Short (95% over 21bp)
GAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCT10.8928571428571428No Hit
TCCCCCGATGCTGGAGGTCGACCAGATGTCCGAAAGTGTCCCCTGTCTCTTATACACATCTCCGAGCCCACGAGA10.8928571428571428No Hit
TTTTTGGGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCTGTCTC10.8928571428571428No Hit
CCGTGACGCCCGCGATCATGAACGGCAGCAGATAGTGGAGCGAGAAGAAGCGGTTCAACGTCGCCCCGCCGACGA10.8928571428571428No Hit
CAGGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCA10.8928571428571428No Hit
CCCCTGGAAGCAGAGAGACTGCTTGTATAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTCTG10.8928571428571428No Hit
TATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTCTCTTATACACATCTC10.8928571428571428No Hit
TATCAACGCAGAGTACATGGGGGTGTGGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTT10.8928571428571428No Hit
GAATTCACCTCCACCACGTCTGGCACTGGCCACAATCAGACCCGGGCCCTCAGGGCATCAGAGTCCGGCATATGA10.8928571428571428No Hit
GTACATGGGGAGGAGGCCGGAAAGACAGAGGCTCGGTTCCGAGCTGTCTCTTATACACATCTCCGAGCCCACGAG10.8928571428571428No Hit
GGGTGTGGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTTCTCACTGTCTCTTATACACA10.8928571428571428No Hit
AGAGTACATGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTCTCTTATACACATCTCCGAGCCCACG10.8928571428571428No Hit
ACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
CGCAGCAATTGACGTTACCCCCATGTACTCTGCGTTGATACTGTCTCTTATACACATCTCCGAGCCCACGAGACA10.8928571428571428No Hit
CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG10.8928571428571428Illumina PCR Primer Index 10 (96% over 28bp)
GGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCTGTCTGTCTCTTA10.8928571428571428No Hit
ATTGTTACGGCCGCCGTTTACTGGGACTTCAGTCAAGAGCTTGCACCCCATCATTTAATCTTCCAGCACCGGGCA10.8928571428571428No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGGGGGAACCGGGGGAGTTTTTTTGG10.8928571428571428No Hit
CGCTCCCAGGAAGGCGCCGGCGGGGTCCGTCCGCAGCAGGTGCTCGCGCTCGGGGCTCACCCCCAGGCTCTGTCT10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCAGACCCGTAGCGACTGTCC10.8928571428571428No Hit
ATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.8928571428571428No Hit
GCTGGAGGTCGACCAGATGTCAGAAAGTGTGGCCGCGCCGTGTGCCGGGGGGGGGTGGGGCGGGGGGGGCGCGCG10.8928571428571428No Hit
GGTCTGCTGAGAGGTTCCAGAGGCAATATTCGTTAGAGCCCAGGCAGCTTCAAACTGTAATGTACAATTCTCATT10.8928571428571428No Hit
ACAGGACAGAGGCTCGGTTCCGAGCAGACCCGTAGCGACTGTGAATGAGAACCTGTACTTCCAGAGCGGAAGCGA10.8928571428571428No Hit
GGGCTCGGGTTGAGGGGCTGGGGACGTCCTCTGCTGACTGTGGCCACCGCCCTGATGCTGCCCGTGAAGCCCCCC10.8928571428571428No Hit
CCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCACGTGTCCCGCCCTACTCTATTCGCGCTGTCTCTTAT10.8928571428571428No Hit
GAGGTGCGCTGCAACAACTGCGGCAGCCCCCTGGGCCATGTGTTCCCTGACGGTCCCGCACCCACGGGGGAGCGC10.8928571428571428No Hit
GTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTC10.8928571428571428No Hit
GCTGGAGGTCGACCAGATATCCGAAAGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.8928571428571428No Hit
GAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC10.8928571428571428No Hit
GTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGC10.8928571428571428No Hit
CAATCAATGAGAATTTTCAAAAACTAGGCTGGGCGTTTTGGCTCATGCCTATAAACCCAGCACTTTGGGAGGCTG10.8928571428571428No Hit
GAATAAAATCACAATAAAAGAGGAGATAGAATAAAAACAAATAATAACTACCGAACAGAACCCCTAAAAAAAAAA10.8928571428571428No Hit
AGTGAGTCGTATTACTGCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCACGAGACA10.8928571428571428No Hit
CCCAAGAGCTGCGACAAGACCCACACCCCCATGTACTCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACT10.8928571428571428No Hit
GTACATGGGGAGGAGGCCGAAAGACAGTCGCTACGGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCTGTCTCT10.8928571428571428No Hit
ATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACCTGTCTCTTATACACATCTCCG10.8928571428571428No Hit
GTACATGGGGAGGAGGCCGAAAGACAGAGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATC10.8928571428571428No Hit
GGCGGTGGCTGCGCGGCGCTGGAGCGGCGGCGGGGGCCTTGGGGCAGTCCGAGGGTGCGGTGAAGAGGTGACGGA10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGTTAGGTTTCGAGCCCTGATATTCGTTGTGGTCTATCTGTTTTATGGATTTCAT10.8928571428571428No Hit
GGTATCAACGCAGAGTACATGGGGGGGGGGACACTTTCGGACATCTGGTCGACCTCCAGCATCGGGGGAAAAAAC10.8928571428571428No Hit
GTACATGGGGGTGTGGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTTCTGTCTCTTATA10.8928571428571428No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAAAACGAAAAAAAAAAAAAAAACGGC10.8928571428571428No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAACGCCCCCAAAGGCGGCGACAAGACC10.8928571428571428No Hit
GGGTGTGGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACACGTTCTCATTCCTGTCTCTTATAC10.8928571428571428No Hit
GAGTACATGGGGAGGAGGCCGAAAGACAGTCGCTACGGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACAC10.8928571428571428No Hit
GAATGAGAACCTGTACTTCCAGAGCGGAAGCGAGCCCAAGAGCTGCGACAAGACCTGTCTCTTATACACATCTCC10.8928571428571428No Hit
CCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCACCTGTCTCTTATACACATCTCCGAGCCCAC10.8928571428571428Clontech SMART CDS Primer II A (95% over 21bp)
GAGTACATGGGGGTGTGGGTCTTGTCGCAGCTCTTGGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACT10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGACTGCTGTCTCTTATACACATCTCCGAGCCCACGA10.8928571428571428No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGATGCCCGGCAACCCCCCCGGGTATTTGCGCCATGAATATT10.8928571428571428No Hit
TCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTCTGTCTCTTATACACA10.8928571428571428No Hit
ATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTCTCTTATACACATCTCC10.8928571428571428No Hit
CCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGC10.8928571428571428No Hit
TTTTTTTCCCCGATGCTGGAGGTCGACCAGATGTCCGAAAGTGTCCCCCCCATGTACCTGTCTCTTATACACATC10.8928571428571428No Hit
GATTTTGCTATAGGAAGTATTAGCTAATCAGAACCAAGGTGCCAGGCTGACTCACCAAGGGCTAAGATTGCTTTA10.8928571428571428No Hit
CACCACGGCCGGTGCCGTGGAGAAGGTCGGCGGCGCCAGGAAGGGCAAGGCCATCATCATCATCCTGTCTCTTAT10.8928571428571428No Hit
GAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCAGACCCTGTCTCTTATACACATCTCCGAGC10.8928571428571428No Hit
CACTGTGACTGTGAAAGAGAACCTGTACTTCCAGAGCGGAAGCGAGCCCAAGAGCTGCGACAAGACCCACACCCC10.8928571428571428No Hit
CTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTC10.8928571428571428Clontech Universal Primer Mix Long (96% over 26bp)
GGGTGTGGGTCTTGTCGCAGCTCTTGGGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCT10.8928571428571428No Hit
TTTTTTCCAGAGCGGAAGCGAGCCCAAGAGCTGCGACAAGACCCACACCCCCATGTACTCTGCGTTGATCTGTCT10.8928571428571428No Hit
GACAGAGGCTCGGTTCCGAGCAGACCCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGT10.8928571428571428No Hit
ACGCAGAGTACATGGGGAGGAGGCCGAAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAA10.8928571428571428No Hit
CTGTACTTCCAGAGCGGAAGCGAGCCCAAGAGCTGCGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACT10.8928571428571428No Hit
GGTCCCCGTCAATTCCCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACT10.8928571428571428No Hit
GGTCGACCAGATGTCCGAAAAGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTGG10.8928571428571428No Hit
GTACATGGGGGTGTGGGTCTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTTCTCATTCACAGT10.8928571428571428No Hit
ACACAATGCCATTCATTTTTACACCAAAATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGAAACCTCCC10.8928571428571428No Hit
CCCCTGGAAGCAGAGAGACCCATGTACACTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACGAGACA10.8928571428571428No Hit
ATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCTGTCTCTTATACACATCTCCGAGCC10.8928571428571428No Hit
GAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTA10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCTCTGTGTGAATTGCTGTCTCTTATACACATC10.8928571428571428No Hit
CTGGAGAGCCGGAGACGATTTGAGGAGGCAGAACGACCCTCGCCAATTCAATGGCCAAGTCCAAGCGCCCGATAG10.8928571428571428No Hit
GCTTGTAAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATACCTGTCTCTTAGACAACTC10.8928571428571428No Hit
GAACATGGAGAGCAGGCCCAAAGAAAGATTATCTCAACAGAGCATAAACCAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
GGTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTCTCTTATACACATC10.8928571428571428No Hit
CCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGCTGTCTCTTAT10.8928571428571428No Hit
GCATCAACGTGCTGTCGCTGTCCGAAAAGCAGACCGCGCTGGCCGAAAAGGGCGTGGCCAACGGCAACGGCCAGA10.8928571428571428No Hit
GGTATCAACGCAGAGTACATGGGGTAAGCAGTGGTATCAACGCAGAGAACATGGGAAGCAGGGGTATCACCTCTG10.8928571428571428Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATC10.8928571428571428No Hit
ATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCACCTGTCT10.8928571428571428Clontech SMART CDS Primer II A (95% over 21bp)
GCGGAAGCGAGCCCAAGAGCTGCGACAAGACCCACACCCCCATGTACTCTGCGTTGATACCTGTCTCTTATACAC10.8928571428571428No Hit
TGTGGGGAAACTGGACTGTAATTTGTGGTGGTGGGGAATTGCGTTCGCTTTCTTCTGGAGGTTGTAGTGCAAAAA10.8928571428571428No Hit

[FAIL]Adapter Content

Adapter graph