FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002294255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTT2320.353982300884958TruSeq Adapter, Index 4 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCT43.5398230088495577TruSeq Adapter, Index 4 (95% over 23bp)
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTT43.5398230088495577TruSeq Adapter, Index 4 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAGCTCGTATGCCGTCTTCT21.7699115044247788RNA PCR Primer, Index 36 (95% over 23bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTNGTATGCCGTCTT21.7699115044247788RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATATCGTATGCCGTCTTCT21.7699115044247788RNA PCR Primer, Index 36 (95% over 23bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATTCCGTCTT21.7699115044247788RNA PCR Primer, Index 36 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATATCGTATGCCGTATT21.7699115044247788No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACCAATCTCGTATGCCGTATT10.8849557522123894TruSeq Adapter, Index 4 (95% over 21bp)
CCCCCAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACCAAGCTCGTATGCCGTCTGC10.8849557522123894No Hit
CCACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAACCCACGAGACGGCTGACGATCGCGTATGCCTTCTG10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCCCGAGACGGATAACAATATNGTATGCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCTGTCTCTTAACACATCTCCGAGCCCACGAGACGGATAACAATCTCGNATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAACTCGTATGCCGACTTAT10.8849557522123894No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCCCGAGACGGATAACAATATCGTATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGACTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCTAGCCCACGAGACGGATAACAAGCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATATACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 24bp)
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACTAGCCGGATAACCATCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAACCAGAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCAGGAGACGGAAAACACGCTCGTATGCGGTCTT10.8849557522123894No Hit
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCAACGAGACGGATAACAATCTCGTATGACGTCAT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAACCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
ACACCAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCG10.8849557522123894No Hit
CAAGCAATCAATCCAGTCTCTTATACACATCTCCGAGCCCACGATACGGATAACAATCTCGTATGCCGTCTTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 24bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAACTCGTATGCAGTATT10.8849557522123894No Hit
ACACCAACCAAGAGAACAGCCTGTCTCTGATACACATCTCCGAGCCCACGAGACGGATAACAAACTCGTATGCCG10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACAATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTC10.8849557522123894RNA PCR Primer, Index 4 (95% over 22bp)
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGAAGGATAACAATATNGTATGCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAGAGGCCTGTCTCTTCTACACATCTCCGAGCCCACAAGGCGGATAACAAGCTCGTATGCCATCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCGTAGACACATCTCCGAGCACACGAGACGGATAACAATCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 22bp)
CAACCACAAGAACAGCCTGTCTCTTATACACATCTACGAGCCCACGAGACGGATAACAAGCACGTATGCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAACTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATATCGTATGCCGTATTCT10.8849557522123894No Hit
CTTCAGTGGAACATTCAGTTGTCTGTCTCTATACACATCTCCGAGCCCACGCGACGGCTAACNATCTCGTATGCC10.8849557522123894No Hit
CAAGCAAACGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAACTCTTATGCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTTTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTT10.8849557522123894TruSeq Adapter, Index 4 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATATACATCTCCGAGCCCACGAGACGGATAACAAACGCGTATGACGGGTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCGCCGAGCACACGAGACGGATAACAATCTNGGATGCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATATCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
ACACCAACCAAAAGAACAGCCTGTTCTTATACACATCTCCGAGCCCACGAGACTGATAACAATCTCGTATGCCGT10.8849557522123894No Hit
AACTTTAGCTTACACTGACTCCTAGCCCACGAGACGGATAACAAGCTCATATGCCGTCTTCTGCTTGAACAGAAA10.8849557522123894Illumina Single End Adapter 1 (95% over 24bp)
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTNGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
AACTGTAGCTTACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA10.8849557522123894RNA PCR Primer, Index 4 (96% over 28bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGAAGGATAACAAACTCGTATGCCGTCTGCT10.8849557522123894No Hit
CAAGCAATCAAGGCCAGTCTCTTATCCACATCTCCGAGCCCACGAGACGGATAACAAAATAGGATGCAGTCTTCT10.8849557522123894No Hit
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTT10.8849557522123894TruSeq Adapter, Index 4 (95% over 21bp)
CAAGCAAAAGAACAGCCTGTCTCTTATAACATCTCCGAGCCCACGAGACGGATCACAATCTCGTATTCCGTCTTC10.8849557522123894No Hit
CAACCAAAAGCACAGCCTGTCTCTTATACACATCCCCGAGCCCACTAAACTTATAACAATCTCATATTCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGGCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGGATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
CAACCAAACGAACAGCCTGTCTCTTATACACATCTCCTAGCCCACGAGACGGATAACAATCTCGTATTCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CCTGACTCACATCTCCGAGCCCACGAAACGGATAACAAGCTCGTATGCCGTCTTCTGCTTGAAAAAACAAAAGAG10.8849557522123894TruSeq Adapter, Index 4 (96% over 26bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCACACGAGACGGATAACAATATCGTATGCCGTCTT10.8849557522123894No Hit
CAACAAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTAGGCCGACTT10.8849557522123894No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCTTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTNATATGCCGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACTAGACGGATAACAATCTCGTATGACGGCTT10.8849557522123894No Hit
AACTGTAGCTTACACATCTCCGAGCACACAAGACGGATAACAATCTCGTATGCCGTCTTCTGCTTGGAGAAAACA10.8849557522123894RNA PCR Primer, Index 36 (96% over 29bp)
CAAGCAATCAAGGCCAGTCTGCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCTAGCCCACTAGACGGCTAACAATCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA10.8849557522123894TruSeq Adapter, Index 4 (96% over 28bp)
CAAGCAATCAAGACCAGTCTCTTATACACATCTCCGCGCCCACGAGACGGATAACACTCTCGTATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTAGGCCTTCTT10.8849557522123894No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGTATAACAAACTCGTATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTNGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTCTGCACCTGCGCACATG10.8849557522123894No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCGNGTATGCCGTCTT10.8849557522123894No Hit
CAAGCAAAAGAACAGCCTGTCTCTTAGACACATCTCCGAGCCCACGAGACGGATAAAAATCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 28 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACCATCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAACCAAAAGAACATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGCTAACAATCTCGTATGCAGTCTT10.8849557522123894No Hit
CAAGCAGTAAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAGCTCGTATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
GAAGCAGTGGATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAGAT10.8849557522123894RNA PCR Primer, Index 27 (96% over 30bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAGACTCGTGTGCCTTCTT10.8849557522123894No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCTTATGCCGTCTTCT10.8849557522123894RNA PCR Primer, Index 36 (95% over 23bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGCCGAATAACAATCTCGTATGCCGTCTT10.8849557522123894TruSeq Adapter, Index 4 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACTAGACGGATAACAATCTCGTATGCCGTCTT10.8849557522123894TruSeq Adapter, Index 4 (95% over 21bp)
CGCCCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCCCGAGACGGATAACAAGCTCGTATGCCGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCGGAGCCCACGAGACGGGTAACAATATCGTATGCAGTCTT10.8849557522123894No Hit
CAACCAAAAGAACAGAAGGTCACGTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCAGTCTT10.8849557522123894RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAAAAGAACAGCCTGTCTCTGATACAAATCTCCGAGCCCACGAGACGGATAACAATCTNGTATGCCGGCTT10.8849557522123894No Hit

[FAIL]Adapter Content

Adapter graph