FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002294373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2674466
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCAGGGTGGACATGGGCACGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGC116270.43474099128573707No Hit
CATCCATAGCGTCCTCAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC37210.13913057784245528No Hit
GTCCAGGGTGGGCATGGGCACGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGC37200.13909318720073466No Hit
CTCCAGGATCGAACCCTGATCCTCTGTACCCGTTGTGACCATGAATGGACGTGGCGCTTTCATCGGGAGTTGATA36610.13688713933921762No Hit
CCCGATGAGCAGCACTACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC35500.13273677810822795No Hit
CCTTAGAAGTGTGAGCAATCTTTAAGGCCCACTCTCCAGGATCGAACCCTGATCCTCTGTACCCGTTGTGACCAT32110.12006135056493522No Hit
GGTCACGTCCTTCTTGATCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC27680.10349729628269719No Hit
CATCCGCAGCGTCCTCAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTC27440.10259992088140213No Hit
ATCCTGGAGAGTGGGCCTTAAAGATTGCTCACACTTCTAAGGAAGGCAGCAGGCGCGTAACGTTCCCATTGGACA27380.10237557703107836No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)