FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002294507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106
Sequences flagged as poor quality0
Sequence length75
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG2523.58490566037736No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT65.660377358490567No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC43.7735849056603774No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA32.8301886792452833No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCCAATTTCAGCTCCATTGGGATCATG21.8867924528301887No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGTGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG21.8867924528301887No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCTTCTTTTTTCTTCCTGGCAGTATTAT21.8867924528301887No Hit
GCACAGGTCGTATACGCAGTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG21.8867924528301887No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTCTGCCCCTGCGCACATG21.8867924528301887No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCACTG10.9433962264150944No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTGTCAACTCTTAACGGCCCC10.9433962264150944No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAAGAGATATCTCGTATGCCGTCTT10.9433962264150944RNA PCR Primer, Index 17 (95% over 21bp)
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCTAAGGGGCCCTG10.9433962264150944No Hit
GCAAAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCGG10.9433962264150944No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGTGGCCCCCTCAGTGA10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGTTCGCGAAGTGGCCCTG10.9433962264150944No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTCTTCCCCTGCGCACATG10.9433962264150944No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAATCAGCACCCTTTCAACAACTCCTGTT10.9433962264150944No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCATTCTCTCTTCTTTTTTCTTCCTGGCAGTATTAT10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCGGGCAGGTCGCGAAGGGGCCATG10.9433962264150944No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGACTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCAGGGCCCGCTCCCC10.9433962264150944No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT10.9433962264150944No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGGGGCACCAGCAGCGGGTAGCCGGCAA10.9433962264150944No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.9433962264150944No Hit
TCTCATGCTCGCAGCTGCCGCCCAGCGGCTCCGGTGCGGCAGGTGGGGCTGGAGGCTGCGCGGGGCCCGCGCCCC10.9433962264150944No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCGTCTTTTTTCTTCCTGGCAGTATTAT10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACAGCCTGGCAGGTCGCGAAGGGGCCCTG10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGACGGACTCAGCACCGCCTGCCAGGTCGCGCAGGGGCCCTG10.9433962264150944No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGTTGCGGGGGGCCCCCTCAGTGA10.9433962264150944No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGTGCCCCCTCAGTGA10.9433962264150944No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGTGCCCCCTCAGTGC10.9433962264150944No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTTCAGAATGGCCGGGATGCTGGTGGC10.9433962264150944No Hit
TGAATGAGGTCAAGAGGATCTGGTGAGCCCTGGCAGAGAGGACTTATATAACAGTTGCTTTGTTGACAACAGTCA10.9433962264150944No Hit
TCTCGTGCTCGCCGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTTGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGAAGGTCGCGAAGGGGCCCTG10.9433962264150944No Hit
GAAGCAGTGGATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAGTA10.9433962264150944TruSeq Adapter, Index 3 (96% over 28bp)
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGTTACTCAGCCCCGCCTGGCAGGTCGCGACGGGGCCCTT10.9433962264150944No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAAAAACGGAGTGTTGCCATTCAGTTA10.9433962264150944No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTGTCTACTCTTAACGGCCCC10.9433962264150944No Hit
AACTGTAGCTTACACTGACTCCGTGGAACGGTTTCTCCCCAATGAGACGAACGTCTGTGTTGTTATAGGCCAGGT10.9433962264150944No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTTTCCACTCTTAACGGCCCC10.9433962264150944No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTATTGACTAGACAAAACCACTGCTGCAGAACTTGATAGCCACAC10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGTCGGAAGTACTCAGATGGACGCAGCAGCGACTGGCAGGTCGCGAAGGGGCCCTG10.9433962264150944No Hit
TCTCGTTCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.9433962264150944No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGGCACCGGGTCATTCTTTTTAATATGTGCTTTAGACTCTCCACT10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCATCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.9433962264150944No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGAACGTCTGTGTTGTTATCAGCCAAGT10.9433962264150944No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTTTCAGCAAACACTCGGCAGGAGTCAG10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGTGACTCAGCACCGCCTGGCCGGTCGCGAAGGGGCCCTG10.9433962264150944No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGTGGGCCCCCTCAGTGA10.9433962264150944No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGACACCGGGTCATTCTTTTTAATATGTGCTTTAGACTCTCCACT10.9433962264150944No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCGCTT10.9433962264150944No Hit
GTGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGATG10.9433962264150944No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAATCAGCACCCTTTCAACAACTCCTGTT10.9433962264150944No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTAAGAGGGACTCAGCACCGCCTGGCAGGGCGNGAAGGGGCGCTG10.9433962264150944No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATTATTCTTTTATTGGCATGTGCCAATA10.9433962264150944No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAAGGCTGGCGGGGACCGTGTAGAGCAGCGGGAAGATGCCGAT10.9433962264150944No Hit
TCTCGTGCTCGCAGATGCCTCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.9433962264150944No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGAACGTCTGTGTTGNTATCAGCCAAGT10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGNGCAGGGGCCCTG10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGATCGCGAAGGGGCCCTG10.9433962264150944No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAATGGGCCCTG10.9433962264150944No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCAATATCCATTTCAACAAAACATCCGAAGCAGGAAGG10.9433962264150944No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTGTCTCCCCAAGGAGACGAACGTCTGTGTTGTTATCAGCCAAGC10.9433962264150944No Hit
ATGCTCAGTTGTCGGTGATTCTCACTTTACAACTTTTGATGGTCGACATTATTCTTTTATTGGCATGTGCCAATA10.9433962264150944No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAAAAACGGAGTGGTGCCATTCAGTTA10.9433962264150944No Hit

[OK]Adapter Content

Adapter graph