FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002294553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences685
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC558.02919708029197No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGC344.963503649635037No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG263.795620437956204No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC253.64963503649635No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGT243.5036496350364965No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG233.3576642335766427No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTT233.3576642335766427No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGA233.3576642335766427No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTG223.2116788321167884No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGC202.9197080291970803No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAG192.7737226277372264No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGT172.4817518248175183No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAA172.4817518248175183No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGG172.4817518248175183No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCT152.18978102189781No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC152.18978102189781No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT142.0437956204379564No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCA142.0437956204379564No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCACGAGAC121.7518248175182483No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATT111.6058394160583942No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCG111.6058394160583942No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCG111.6058394160583942No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAG111.6058394160583942No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAG101.4598540145985401No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAAT101.4598540145985401No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTT101.4598540145985401No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAG91.313868613138686No Hit
TGAATGAGGTCAAGAGGATCTGGTGAGCCCTGGCAGAGAGGACTTATATA91.313868613138686No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC81.167883211678832No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC81.167883211678832No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCAAGCGATATCTCGT71.0218978102189782No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTTTTGACTAGACAAAACCA60.8759124087591241No Hit
CTGTTTTCATCCCACAGGTTGTTATTTTGTACTTTGAGCCAAGCACATTT60.8759124087591241No Hit
CTTCAGTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCA50.7299270072992701No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGACACCGGGTCATTCTTTT50.7299270072992701No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTTTTGACTAGACAAACCAC30.43795620437956206No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCT30.43795620437956206No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAAACTCGT30.43795620437956206No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG30.43795620437956206No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGGCACCGGGTCATTCTTTT30.43795620437956206No Hit
CCTGACTCACATCTCCGAGCCCACGAGACCAAGCGATATCTCGTATGCCG20.291970802919708No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAACCTCGT20.291970802919708No Hit
AACTGTAGCTTACACATCTCCGAGCCCACGAGACCAAGCGATATCTCGTA20.291970802919708No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAAT20.291970802919708No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATTCCGAGCCCACGAGACC20.291970802919708No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAATCTCGT20.291970802919708No Hit
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGAC20.291970802919708No Hit
AACTGTAGCTTACACTAACTCCGAGCCCACGAGACGGATAACAATCTCGT20.291970802919708No Hit
CTTCAGTGGAACATTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCA20.291970802919708No Hit
CCTTTAACAAGTATGCCTGTCTGCACCCCACTGGTGGCTACTTTTGCTAT10.145985401459854No Hit
TTTCAGGTCAGAGCTGAAGTTCTCACGACGTTTGCCCTCTGTGGATTTGC10.145985401459854No Hit
AAACTCCCTGACCAATCGTCTCTTATACACATCTCCGAGCCCACGAGACC10.145985401459854No Hit
CTGAATCCGAGCCCACGAGACGTGCATTCATCTCGTATGCCGTCTTCTGC10.145985401459854RNA PCR Primer, Index 45 (100% over 26bp)
GTCCAGGGTGGGCGTGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT10.145985401459854No Hit
TCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCG10.145985401459854No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGTAGGTGGGGCG10.145985401459854No Hit
GTAAAAGTTGAAATGTCAGGGCCCACGAGACGGATAACAATCTCGTATGC10.145985401459854No Hit
ACATCAGCATCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAG10.145985401459854No Hit
GGCTGTGGTGTGAGTCCGGGTGGAGGCCGTAGCGCGCCATTTGCACCCGC10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAAGCACGT10.145985401459854No Hit
AAAGTCTCTGACGTGGATGAGTTTGTGAGTCTGGAAGCTCAGGAGGAGAA10.145985401459854No Hit
AGCCAAAGGGTCTAAAGAAGTGGAAGTCACTCTTGTTCGGAAAGACAAAG10.145985401459854No Hit
GACATTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGGG10.145985401459854No Hit
CTGGAATCCCGAGCCCACGAGACGATGCACAAACCCGTATGCCGTCTTCT10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCATCGACCATCTCGT10.145985401459854No Hit
GTCCAGGGTGGGCATGGATCGCAGGGCCGCGGGCACGGGGGGCACTGCGT10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGCTAACAACCTCGT10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTGTACACATCTCCGAGCCCACGAGACC10.145985401459854No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTACTGCGTCTCCACGTTGC10.145985401459854No Hit
GTAGTGCTGCTCATCGGGCTGTCTCTTATACACATCTCCGAGCCCACGAG10.145985401459854No Hit
AACTGTAGCTTACACTACTCCGAGCCCACGAGACCAAGCGATATCTCGTA10.145985401459854No Hit
AAAGTCTCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCCACGGACCATCGACCATCTCGTATGCCGT10.145985401459854No Hit
CTTCTTGTTTTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGAG10.145985401459854No Hit
CATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAA10.145985401459854No Hit
AAAGTCTCTGACGTGGATGAGCTTGGGAGTGTGGAAGCTCAGGAGGAGAA10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTATATCTCCGAGCCCACGAGACCAAG10.145985401459854No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCCCTGT10.145985401459854No Hit
CAATGACATGTATTCCCCTCTTACCTTAAGGCTGTGACTCTTTCTCTCTT10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCTACGAGACGGATAACAAACCCGT10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACAAGCGTGTATCTCGTATGCCG10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCAACGAGAC10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACACACTCGT10.145985401459854No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGCTTTGC10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCAAGAGAC10.145985401459854No Hit
GTTTCCAGGTCAAGGGTAACGGAACGTGGACCAAGTCCCGCGTCTCCTCC10.145985401459854No Hit
CAGGGACATGTCTTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCT10.145985401459854No Hit
CAAGCAATCAAGGCCAGTCTCTATACACATCTCCGAGCCCACGAGACCAA10.145985401459854No Hit
CAAGCATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAGC10.145985401459854No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAC10.145985401459854No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCAACTTCTACAAT10.145985401459854No Hit
ATAGCAGAATCATCGTGGTCTCCGAGCCCACGAGACGGATAACAATCTCG10.145985401459854No Hit
GTAAAAGTTGAAATATCAGGGCCCACGAGACGGATAACAATCTCGTATGC10.145985401459854No Hit
TTTCAGCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCT10.145985401459854RNA PCR Primer, Index 36 (95% over 24bp)
GTTTCCAGGTCAAGGGCAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC10.145985401459854No Hit
TTTCAGGTCAGAGTTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGC10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGGACGGATAACAATCTCGTA10.145985401459854No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACGTGCATTCATCCCGT10.145985401459854No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACACGC10.145985401459854No Hit
TTTCAGGTCAGAGCCCACGAGACGGATAACAACATCGTATGCCGTCTTCT10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATACCAAGCTCGTATGCCG10.145985401459854No Hit
AAAGTCTCTGACATGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAA10.145985401459854No Hit
GTAAAAGTTGAAATGTCAGGGCCCACGAGACGGATAACAATCCCGTATGC10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCTACGAGTCGATGTACAATTTCGTATGCCG10.145985401459854No Hit
GCTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC10.145985401459854No Hit
CCTCTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAAT10.145985401459854No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCGAGCCCACGAGACCAA10.145985401459854No Hit
TAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.145985401459854No Hit
GAAGCAGTGGATCTCCGAGCCCACGAGACCAAGCGATATCTCGTATGCCG10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATAAAAACCTCGTATGCCG10.145985401459854No Hit
TTTCAGGTCAGAGCGCACGAGACGGATAACAATGTCGTATGCCGTCTTCT10.145985401459854Illumina PCR Primer Index 4 (95% over 21bp)
CTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTTT10.145985401459854No Hit
GTAGTGCTGCTCGTTCAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG10.145985401459854No Hit
CTGTTTTCATCCCACAGGATGTTATTTTGTACTTTGAGCCAAGCACATTT10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACGCATCTCCGAGCCCACGAGAC10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGC10.145985401459854No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGTTCGACATT10.145985401459854No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGTACCG10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGTGCATTCATCTCGTATGCCG10.145985401459854No Hit
GTAAAAGTTGAAATGTCAGGGCCAGCACCTTCTGCTGCGTCTCCACGTTG10.145985401459854No Hit
GTCATTGTCACTGGTAAGCTCCAGCACCTTCTGCTGCGTCTCCACGGTGC10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCTCACGAGAC10.145985401459854No Hit
GCACAGGTCGTATACGCATTGGCGGAACTACTGCGAGGGACTCAGCACCG10.145985401459854No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG10.145985401459854No Hit
CTTTGACAGCATCACGAGTTTCACCGGCATCACCAATGCCATACTCATTT10.145985401459854No Hit
TTTCAGGTCAGAGCCCACGAGACGATGCACAATCTCGTATGCCGTCTTCT10.145985401459854Illumina PCR Primer Index 4 (95% over 22bp)
CCTGACTCACGTTTCCGAGCCCACGAGACCAAGCGATATCTCGTATGCCG10.145985401459854No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGAGGCGGCAGGTGGGGCG10.145985401459854No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCAGAGCCCACGAGAC10.145985401459854No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCG10.145985401459854No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCCCTCT10.145985401459854No Hit
GTCCAGGGTGGGCATGGATTGCTGGGCCGCGGGCACGGGGGGCACTGCGT10.145985401459854No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGGTTGCCCTCTGTGGATTTGC10.145985401459854No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGGTTTGC10.145985401459854No Hit
CCTTGCGCAGCTCGAGCAGCTCTTACTTTGCGACCTTTCTCCATAAACTC10.145985401459854No Hit
GAAGATACTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTT10.145985401459854No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGT10.145985401459854No Hit
TAAAATAGTAGCCCTCTCGCACTCACCAGGTCCGGTCGGTAGTACCTGTG10.145985401459854No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGATAAGGAGGAGAA10.145985401459854No Hit
CAGTGACATGATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCTT10.145985401459854No Hit
CAAGCAAAAGAACAGCCTGTTTCTTATACACATCTCCGAGCCCACGAGAC10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTAGACACATCTCCGAGCCCACGAGAC10.145985401459854No Hit
CTTCAGTGGAGCATTCAGTTGTCTGTCTCTTATACACCTCTCCGAGCCCA10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTGCATTCATCTCGT10.145985401459854No Hit
CAAGCAATCAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCAA10.145985401459854No Hit
CCTTTAACAAGTATGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.145985401459854No Hit
GACACTTGGCCTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGA10.145985401459854No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCTTCGAGAC10.145985401459854No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAAGCGTGTATCTCGT10.145985401459854No Hit

[FAIL]Adapter Content

Adapter graph