FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002294555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences930
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGT464.946236559139785No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTG454.838709677419355No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTT424.516129032258064No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG404.301075268817205No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGC404.301075268817205No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCT384.086021505376344No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAA363.870967741935484No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGA363.870967741935484No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGC363.870967741935484No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG343.655913978494624No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC343.655913978494624No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGT303.225806451612903No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAG272.903225806451613No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGG262.795698924731183No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATT232.4731182795698925No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTT222.3655913978494625No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAG212.258064516129032No Hit
TGAATGAGGTCAAGAGGATCTGGTGAGCCCTGGCAGAGAGGACTTATATA202.1505376344086025No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAG192.043010752688172No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC181.935483870967742No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCG181.935483870967742No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC171.827956989247312No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGGCACCGGGTCATTCTTTT171.827956989247312No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT161.7204301075268817No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAAT151.6129032258064515No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAG131.3978494623655915No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCG121.2903225806451613No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAAT121.2903225806451613No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTTTTGACTAGACAAAACCA111.1827956989247312No Hit
CTGTTTTCATCCCACAGGTTGTTATTTTGTACTTTGAGCCAAGCACATTT80.8602150537634409No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG80.8602150537634409No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTTTTGACTAGACAAACCAC70.7526881720430108No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCTTG60.6451612903225806No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACGGATAACAATCTCGT60.6451612903225806No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGACACCGGGTCATTCTTTT50.5376344086021506No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAATCTCGT40.43010752688172044No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAACCTCGT30.3225806451612903No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCT30.3225806451612903No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCACGAGAC30.3225806451612903No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC30.3225806451612903No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG20.21505376344086022No Hit
CCTGACTCACATCTCCGAGCCCACGAGACATCATCTCATCTCGTATGCCG20.21505376344086022No Hit
GTCATTGTCACTGGTCAGCCCCAGCACCTTCTGCTGCGTCTCCACGTTGC20.21505376344086022No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCCCCACGTTGC10.10752688172043011No Hit
AACTGTAGCTTACATGACTCCGAGCCCACGAGACGGATAACAATCTCGTA10.10752688172043011No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATAACAATCTCGAATGCCG10.10752688172043011No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACAT10.10752688172043011No Hit
GTTTCCCGGTCAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTTCTCCC10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGAGAAGCGTGTATCTCGT10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAATAATCTCGT10.10752688172043011No Hit
ACACCAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACG10.10752688172043011No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTCTTCATGGTCGACATT10.10752688172043011No Hit
ATAGCAGAGTCGTCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCTGCT10.10752688172043011No Hit
TTTCAGGTCAGAGCCCACGAGACGGATAAAAATCTCGTATGCCGTCTTCT10.10752688172043011RNA PCR Primer, Index 19 (95% over 24bp)
CCTGACTCACATTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG10.10752688172043011No Hit
GGCTGTGGTGTGAGTCTGGGACTTGAACTCTGTCTCTTATACACATCTCC10.10752688172043011No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTATGGATTTGC10.10752688172043011No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTGAGCACCG10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGCGGATAACAATCTCGTA10.10752688172043011No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGTCGTTTGCCCTCTGTGGATTTGC10.10752688172043011No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATAACAAACTCGTATGCCG10.10752688172043011No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCTACGTTGC10.10752688172043011No Hit
CCTGACTCACATTTCCGAGCCCACGAGACCAAGCGATATCTCGTATGCCG10.10752688172043011No Hit
CTCTCAGCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTTC10.10752688172043011TruSeq Adapter, Index 7 (95% over 22bp)
CCTGACTCACGTTTCCGAGCCCACGAGACAAGCGTGTATCTCGTATGCCG10.10752688172043011No Hit
CCTGACTCACGTTTCTGAGCCCACGAGACGGATAACAATCTCGTATGCCG10.10752688172043011No Hit
GACACTGGGCCTGGAGTACGGTGATGGCGTTAAGGCTGTGGTAGGGCCGG10.10752688172043011No Hit
GGTTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC10.10752688172043011No Hit
CAAGCAATCAAGGCCAGCCTGTCTCTTATACACATCCCCAGCCCACGAGA10.10752688172043011No Hit
TTTCAGGTCAGAGCCCACGAGACGATGCACAATGTCGTATGCCGTCTTCT10.10752688172043011RNA PCR Primer, Index 36 (95% over 22bp)
CTCCTTGTTTTCGGGACATGCTTCAGCCCCTACCCCTCCTTGGTCACTGT10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAAACTCGT10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCCCGT10.10752688172043011No Hit
CATAGTTACCTTCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCG10.10752688172043011No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCGCCACGTTGC10.10752688172043011No Hit
CCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTC10.10752688172043011No Hit
CAAGAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAGC10.10752688172043011No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCACAGACG10.10752688172043011No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGTGGGACTCAGCACCG10.10752688172043011No Hit
TAAAAAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGC10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCACGT10.10752688172043011No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCAGGTCGGTAGTACCTGTG10.10752688172043011No Hit
GCTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC10.10752688172043011No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCCCTGTGGATTTGC10.10752688172043011No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGTCACCTTCCCATAAG10.10752688172043011No Hit
GGCTGTGGTGGGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC10.10752688172043011No Hit
GTCCAGGGTGGGCATGGATTGTAGGGCCGCGGGCACGGGGGGCACTGCGT10.10752688172043011No Hit
CAAGCAATCAAGGCCAGTCTATCCTGCAGCCCTTGCCACCTTCCCATAAG10.10752688172043011No Hit
CAACCAAAAGAACAGCCTGTCTTTTATACACATCTCCGAGCCCACGAGAC10.10752688172043011No Hit
TGATGAGGTCAAGAGGATCTGGTGAGCCCTGGCAGAGAGGACTTATATAA10.10752688172043011No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCCGTG10.10752688172043011No Hit
GGCTGTGGCGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC10.10752688172043011No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGACACTGT10.10752688172043011No Hit
ATGCTCATTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATT10.10752688172043011No Hit
CAACCAAAAGAACAGCCTGTCTCTTTTACACATCTCCGAGCCCACGAGAC10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACCATCTCGT10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCCCCCCAATGAGACGA10.10752688172043011No Hit
CCTGACTCACATTTCCGAGCCCACGAGACGGATAACAAACTCGTATGCCG10.10752688172043011No Hit
CTGTTTTCATCCCACAGGGTGTTATTTTGTACTTTGAGCCAAGCACATTT10.10752688172043011No Hit
CTTTACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTTT10.10752688172043011No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGTCCTTGCCACCTTCCCATAAG10.10752688172043011No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCCCTGCGGATTTGC10.10752688172043011No Hit
CCTGACGCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG10.10752688172043011No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGTCATTTGCACCCGC10.10752688172043011No Hit
TTTCAGGTCAGAGCCCACGAGACGATGCACAATCTCGTATGCCGTCTTCT10.10752688172043011Illumina PCR Primer Index 4 (95% over 22bp)
AAACTCCTAAGCAGAAAACCTACCGAGCTTCGCTTGGTCAACCCCTCAGC10.10752688172043011No Hit
CCTTTAACAAGTATGCCTGGCAGCACCACACTGGTGGCCACTACTACAAT10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCACACGAGACGGACAACAATCTCGT10.10752688172043011No Hit
CTTTGACAACATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTT10.10752688172043011No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCG10.10752688172043011No Hit
GGCTGTGGTGTGAGTCCGAGCCCACGAGACGGATAACAATCTCGTATGCC10.10752688172043011No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCACTTGCCGCCTTCCCATAAG10.10752688172043011No Hit
GACACTTGGCCTGGAGTACGGCGATGGCGTTGAGGCTGTGGTAGGGCCGG10.10752688172043011No Hit
TTTCAGGTAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTCGCC10.10752688172043011No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACCATCGACCATCTCGT10.10752688172043011No Hit
CTGGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG10.10752688172043011No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATACTGGCGGGGACCG10.10752688172043011No Hit
TGGACAAGCACAGCAACGAGCCCACGAGCCATGCGTGTATCTCGTATGGC10.10752688172043011No Hit
ATAGCAGAATCATCGTGGTCTTCAGAAGTGCCCACGTTGCTCTTGCCGCT10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCAAGCGATATCTCGT10.10752688172043011No Hit
AACTGTAGCTTACACTGCTCCGAGCCCACGAGACGGATAACAATCTCGTA10.10752688172043011No Hit
CAAGCAATCAAGGCCAATCTACCCTGCAGCCCTTGCCACCTTCCCATAAG10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAACCTCGT10.10752688172043011No Hit
CCTGACTCACGTTTCCGCGCCCACGAGACGGATAACAATCCCGTCTGCCG10.10752688172043011No Hit
CTCTCAGCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTC10.10752688172043011TruSeq Adapter, Index 4 (95% over 22bp)
GCACAGGTCGTATATGCATTGGCGGAAGTACTCAGAGGGACTCCGCACCG10.10752688172043011No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACGGATAACAATTTTGC10.10752688172043011No Hit
TTTCAGGTCGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCC10.10752688172043011No Hit
CTTTGACAGCATCACGAGGTTCACCGGGATCACCAATGCCATACTCATTT10.10752688172043011No Hit
CTGATCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCTGCT10.10752688172043011RNA PCR Primer, Index 36 (96% over 27bp)
AACTATAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGT10.10752688172043011No Hit
GCACAGGTCGTATACGCATTGGCGGAATTACTCAGAGGGACTCAGCACCG10.10752688172043011No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGACCTCTGTGGATTTGC10.10752688172043011No Hit
ACATCAGCCTTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAGC10.10752688172043011No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACAG10.10752688172043011No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGGGCGATTTGCAACCGC10.10752688172043011No Hit
TAAAATAGTAGCCCTTCCGCACTCACCAGGTCCGGTCGGCAGTACCTGTG10.10752688172043011No Hit
GTAAAAGTTGAAATGTCAGAGCCCACGAGACGGATAACAATTTCGTATGC10.10752688172043011No Hit
ATTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAAGCCCGT10.10752688172043011No Hit
TTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAAGCGTGTATCTCGT10.10752688172043011No Hit
TAAAATAGTAGCCCCCCCGCACTCACCAGGTCCGGTCGGTAGTACCCGTG10.10752688172043011No Hit
CAGTGAATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCTT10.10752688172043011No Hit
GTCATTGTCACTGTTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGC10.10752688172043011No Hit
GTAAAAGTTGAAATGTCGGGGCCAGTCACAGTTTTGACTAGACAAACCAC10.10752688172043011No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGCCGGATAACAATCTCGT10.10752688172043011No Hit

[FAIL]Adapter Content

Adapter graph