FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002294659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002294659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1192
Sequences flagged as poor quality0
Sequence length75
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA30.25167785234899326No Hit
GTCTTAGGTTGTGAAATAACAGATAGCTGGGCCTCACAGGACAGGCACCAGAGTGTTGGGAATGGAGGCTGTTCT20.16778523489932887No Hit
GTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATT20.16778523489932887No Hit
CAGGCTGTACTGCCAGGCTGCGATGCGTGCTGGCCCCCGCACAGGCTCTGTCTCTTATACACATCTCCGAGCCCA20.16778523489932887No Hit
ATGTAGCCCATGCCCCGCTGGGACTCCTTGGAACTGAACATGGAGAGATAGTGCAGGAAAGGGGCCTCGGAAGTG20.16778523489932887No Hit
AACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCC20.16778523489932887No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCCGCC20.16778523489932887No Hit
GTATAAGAGACAGCATCCATAGCGTCCTCAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCTCATGAAT20.16778523489932887No Hit
GTCTACAATGCATCTAATAACGAGCTGGTTCGTACCAAGACCCTGGTGAAGAATTGCATCGTGCTCATCGACAGC20.16778523489932887No Hit
GCACAGGATGGTGGAAAGTTAGTGTATTCCTTCTGGGGACTTGAAGCCTTGGTTTCCTCAATTCCTTTGTGCTTG20.16778523489932887No Hit
CTCTGGAACCATCATCCCGCTTCTCTCCGGCCTGAGCATCTCAGGGAGACCAGGGGCCGAGCCGCTGAGCAGGTG20.16778523489932887No Hit
GATCGCCAACCCAAGGTCCTGGAGGCGCAGGCCCGCCTGGAGCGCGCCAAGCTGGATCGCTCCTACGCCGCCGTG20.16778523489932887No Hit
GCTCTAGAAAAGGGGCGCATTGCGATCCAACCATCGGCAGCCGATTCCGTGTCTTGATCACGGGGTGGGAGAGAA20.16778523489932887No Hit
GTGCTAAACCGTTTATTTTCCACGGATGAGTCACAATCTGAAGAATCAAACTTCCATCCTGAAAATCTATATGTT20.16778523489932887No Hit
GGAATGTAGTGGTGCAATAACAGCTCACTGTAGCCTCGACCTCCTGGGCTCAAGCCATCCCCAACCTCACCCTCC20.16778523489932887No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)