FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737
Sequences flagged as poor quality0
Sequence length150
%GC49

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC8311.261872455902306No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCACGAGAC435.834464043419267No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG314.2062415196743554No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG314.2062415196743554No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGT314.2062415196743554No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC283.7991858887381276No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC283.7991858887381276No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTT202.7137042062415198No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCT192.578018995929444No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGT172.3066485753052914No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGA172.3066485753052914No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTTGGAAGATCTCGT152.03527815468114No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAG152.03527815468114No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGC152.03527815468114No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTG141.8995929443690638No Hit
CTTCTTGTTTTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGAG121.6282225237449117No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCG121.6282225237449117No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACAACCAACGATCTCGTATGCCG121.6282225237449117No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGC111.4925373134328357No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC111.4925373134328357No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAACCAACGATCTCGT101.3568521031207599No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC91.2211668928086838No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAAT91.2211668928086838No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACAACCAACGATCTCGT70.9497964721845319No Hit
AAACTCCCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGAC70.9497964721845319No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT60.8141112618724559No Hit
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTGCATTCATCTCGT60.8141112618724559No Hit
CTTCAGTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCA60.8141112618724559No Hit
AACTGTAGCTTACACATCTCCGAGCCCACGAGACGTGCATTCATCTCGTA60.8141112618724559No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAA60.8141112618724559No Hit
CTTCAGTGGAACATTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCA60.8141112618724559No Hit
CCTGACTCACATCTCCGAGCCCACGAGACGTGCATTCATCTCGTATGCCG50.6784260515603799No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGG50.6784260515603799No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTT50.6784260515603799No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCCACGTATATCTCGTATGCCG40.5427408412483039No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAG40.5427408412483039No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACATCATCTCATCTCGT40.5427408412483039No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAACCAACGACCTCGT40.5427408412483039No Hit
TGAATGAGGTCAAGAGGATCTGGTGAGCCCTGGCAGAGAGGACTTATATA40.5427408412483039No Hit
AAAGTCTCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGAC30.40705563093622793No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAG30.40705563093622793No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCCACGTATATCTCGT30.40705563093622793No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGTTGGAAGATCTCGTATGCCG30.40705563093622793No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAG30.40705563093622793No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTGCATTCATCTCGT30.40705563093622793No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCT20.27137042062415195No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACAATCTCCGAGCCCACGAGACG20.27137042062415195No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACGTTGGAAGATCTCGT20.27137042062415195No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATTTCCGAGCCCACGAGAC20.27137042062415195No Hit
CCTGACTCTTATACACATCTCCGAGCCCACGAGACGTGCATTCATCTCGT20.27137042062415195No Hit
CAAGCAATCAAGGCCAGTCTGTCTCTTATACACATCTCCGAGCCCACGAG20.27137042062415195No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAAT20.27137042062415195No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAATCTCGT20.27137042062415195No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG20.27137042062415195No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACGATGCACAATCTCGT20.27137042062415195No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG20.27137042062415195No Hit
TGGAATAAGTTCAGTCTCTTATACACATCTCCGAGCCCACGAGACGTGCA20.27137042062415195No Hit
GTAAAAGTTGAAATGTCAGGGCCCACGAGACGATGCACAATCTCGTATGC10.13568521031207598No Hit
CCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTG10.13568521031207598No Hit
GACACTTGGCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGGG10.13568521031207598No Hit
GGCTGTGGTGTGAGTCTGGGACTTGAACACTGTCTCTTATACACATCTCC10.13568521031207598No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCGGCAATAAG10.13568521031207598No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAACCCACGAGAC10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCTACGAGACGT10.13568521031207598No Hit
CAAGCAATCAAGGCCAGCCTGTCTCTTATACACATCTCCGAGCCCACGAG10.13568521031207598No Hit
CTTCTTGTTTTGGAGCACTCAGTTGTCTGTCTCTTATACACACCTCCGAG10.13568521031207598No Hit
CAAGCAAAAGAACAGCCTTTCTCTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCTAGCCCACGAGAC10.13568521031207598No Hit
AACTGTAGCTTACACATCTCCGAGCCCACGAGACGTTCATTCACCTCGTA10.13568521031207598No Hit
AGCCAAAGGGTCTAAAGAAGTGGAAGTCACTCTTGTTCGGAAAGACAAAG10.13568521031207598No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCT10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCATCGACCATCTCGT10.13568521031207598No Hit
GGTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTG10.13568521031207598No Hit
CAAACAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGT10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGCTGGAAGAACACGT10.13568521031207598No Hit
GGCTGTGGTGTGAGTCCGAGCCCACGAGACAACCAACGATCTCGTATGCC10.13568521031207598No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCA10.13568521031207598No Hit
ACACCAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACG10.13568521031207598No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACATCATCCCATCTCGT10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTATACACATCTCCGAGCCCACGAGACGTG10.13568521031207598No Hit
CTTTGACAGCATCACGAGCCCACGAGACCATCGACCATCTCGTATGCCGT10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCATCGACCACCTCGTATGCCG10.13568521031207598No Hit
GGCTGTGGTGTGAGTCTGGGACTTGAACTCTGTCTCTTATACACATCTCC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCGGAGCCCACGAGAC10.13568521031207598No Hit
CAACCAAAAGACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACG10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACAACCCACGATCTCGTATGCCG10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCCCCGAGCCCACGAGAC10.13568521031207598No Hit
CTTCAGCGAAACACAAACAAGAAACTGTCTCTTATACACATCTCCGAGCC10.13568521031207598No Hit
CTTCAGTGGAACATTTTCAGGTAGGTGGACCTGTCTCTTATACACATCTC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGACAC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTTTCTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAACCAACGAACTCGT10.13568521031207598No Hit
GCACAGGTCGTATACGCATTGACGGAAGTACTCAGAGGGACTCAGCACCG10.13568521031207598No Hit
CCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTGCAT10.13568521031207598No Hit
CACGAAGTCATGATTGAATCGCGAGTGGTCGGCAGATTGCGATAAACGGT10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTTTATACACATCTCCGAGCCCACGAGACGTG10.13568521031207598No Hit
CAACCAAAAGTACAGCCTGTCTCTTATACACATTTCCGAGCCCACGAGAC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTATTATACACATCTCCGAGCCCACGCGAC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCCCTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
ACATCAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACG10.13568521031207598No Hit
CAAGCAATCAAAGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGT10.13568521031207598No Hit
CTCACATCTCCGAGCCCACGAGACGTGCATTCACCTCGTATGCCGTCTTC10.13568521031207598RNA PCR Primer, Index 45 (95% over 23bp)
CATTAGCTGTACCATACTCAGGCACACAAAAATACTGATAGCAGTCGGCG10.13568521031207598No Hit
GGCTGTGGTGGGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC10.13568521031207598No Hit
CTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
AACTGTAGCTTACACACATCTCCGAGCCCACGAGACGTGCATTCATCTCG10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCATTCCCATAAG10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCTCATCTCATATCGT10.13568521031207598No Hit
TTAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTAACTGTC10.13568521031207598No Hit
TTTCAGGTCAGAGCTGAATTCCTCACGACGTTTGCCCTCTGTGGATTTGC10.13568521031207598No Hit
GTTTCCGGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACAACCAACGACATCGTATGCCG10.13568521031207598No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATATCCGAGCCCACGAGAC10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTCTTTACACATCTCCGAGCCCACGAGACG10.13568521031207598No Hit
GTAATGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGTGACGTGCATTCAACTCGT10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGTTGGAAGATCCCGTATGCCG10.13568521031207598No Hit
AGCCAAAGGGTCTAAAGAAGTGGAAGTCGCTCTTGTTCGGAAAGACAAAG10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCCCGAGCCCACGAGACGTG10.13568521031207598No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTAT10.13568521031207598No Hit
AACTGTAGCTTACACATCTCCGAGCCCACGAGACGTGCATTATCTCGTAT10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGTGCATTCATCTCGTATGCCG10.13568521031207598No Hit
GTGGCTGCTCATCGGGCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCCCCGAGCCCACGAGACGT10.13568521031207598No Hit
CAAGCAATCAAGGCCCGTCTCTTATACACATCTCCGAGCCCACGAGACGT10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGCCGT10.13568521031207598No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGCGCCCACGAGAC10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACAACCAACGATATCGTATGCCG10.13568521031207598No Hit
CAAGCAAAAGAACAGCCTGTCTTTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGT10.13568521031207598No Hit
CAACCAAAAGGACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.13568521031207598No Hit
AAATCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAA10.13568521031207598No Hit
AACTGTAGCCTACACTGACTCCGAGCCCACGAGACCCACGTATATCTCGT10.13568521031207598No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCACACGAGAC10.13568521031207598No Hit
GAAGCAGTGGATCTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG10.13568521031207598No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGACCGTAGCGCGCCATTTGCACCCGC10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACAACCAACGAACTCGTATGCCG10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCG10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGTTACAACCAACGAACTCGT10.13568521031207598No Hit
GCACAGGTCGTATACACATTGGCGGAAGTACTCAGAGGGACTCAGCACCG10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTTGGAAGACCTCGT10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACAAGACGT10.13568521031207598No Hit
CCTGACTCACGTTTCTTATACACATCTCCGAGCCCACGAGACGTGCATTC10.13568521031207598No Hit
CTTCAGTGGAACATTCAGTTGTCTGTCTCTTATACACGTCTCCGAGCCCA10.13568521031207598No Hit
ACTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAAT10.13568521031207598No Hit
CCTTTAACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATT10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAACCTCGT10.13568521031207598No Hit
CCTGACTCACGTTTCCGAGCCCACGCGACAACCAACGATCTCGTCTGCCG10.13568521031207598No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACACCTCGGAGCCCACGAGAC10.13568521031207598No Hit
CAAGCAACAAGGCCAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGA10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAACCAACGAACACGT10.13568521031207598No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCCCCTCC10.13568521031207598No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACCTCTTCGAGCCCACGAGCC10.13568521031207598No Hit
AACTGTAGCTTACACTAACTCCGAGCCCACGAGACATCATCTCATCTCGT10.13568521031207598No Hit
CTTCAGTGGAGCATTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCA10.13568521031207598No Hit
TTTCAGGTCAGAGCCCACGAGACATCATCTCATCTCGTATGCCGTCTCCT10.13568521031207598Illumina PCR Primer Index 7 (95% over 21bp)
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTGCATTCATATCGT10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAACCAACGATCCCGT10.13568521031207598No Hit
GTAGTGCTGCACGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG10.13568521031207598No Hit
GTCCTGGGATTCCAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACG10.13568521031207598No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGATGT10.13568521031207598No Hit
CTTCAGTGGAACATTCAGTTGTCTGTCTCTCATACACATCTCCGAGCCCA10.13568521031207598No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCGCACGAGAC10.13568521031207598No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTATGGCCGG10.13568521031207598No Hit
GAAGCAGTGGATCTCCGAGCCCACGAGACGATGCACAACCTCGTATGCCG10.13568521031207598No Hit
GAAGCAGTGGATCTCCGAGCCCACGAGACGTGCATTCATCTCGTATGCCG10.13568521031207598No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTTCCGCGTCTCCTCC10.13568521031207598No Hit
CATAGTTACCTTCTCCGAGCCCACGAGACAAGCGTGTACCTCGTTTGCCG10.13568521031207598No Hit
AACTGTAGCTTACACTAACTCCGAGCCCACGAGACAACCAACGATCTCGC10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTTGGAAGAGCACGT10.13568521031207598No Hit
GCACAGGTCGTATACGCATAGGCGGAAGTACTCAGAGGGACTTAGCACCG10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACAACCAACGATTTCGT10.13568521031207598No Hit
AACTGTAGCTTACACATCTCCGAGCCCACGAGACGTGCATTCACCTCGTA10.13568521031207598No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCAATACTCAACTCGT10.13568521031207598No Hit

[FAIL]Adapter Content

Adapter graph