FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002295123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2309137
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCAGGGTGGACATGGGCACGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGC53710.23259771940772675No Hit
CTCCAGGATCGAACCCTGATCCTCTGTACCCGTTGTGACCATGAATGGACGTGGCGCTTTCATCGGGAGTTGATA26810.11610398170398724No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG23180.10038382304731162TruSeq Adapter, Index 11 (96% over 28bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)