FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196
Sequences flagged as poor quality0
Sequence length75
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG4321.93877551020408No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA136.63265306122449No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT136.63265306122449No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAATCAGCACCCTTTCAACAACTCCTGTT84.081632653061225No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC63.061224489795918No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAATCAGCACCCTTTCAACAACTCCTGTT52.5510204081632653No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTGTCCACTCTTAACGGCCCC52.5510204081632653No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC42.0408163265306123No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGGGGCACCAGCAGCGGGTAGCCGGCAA42.0408163265306123No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCCGGTCGCGAAGGGGCCCTG31.530612244897959No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGTGGCCCCCTCAGTGA21.0204081632653061No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTTTCAGCAAACACTCGGAAGAAGTAGG21.0204081632653061No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGCCCAATTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA10.5102040816326531No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCTCTTCTCCTCCCGGGTGCGGGTGTCCCCCTCAGTTC10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCACTG10.5102040816326531No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACACTCAGCACCCTTTCAACAACTCCTGTT10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCTCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGCGGCTGCGCGGGGCCCGCGCCCC10.5102040816326531No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCTGCCGTCCAGCACGGCCC10.5102040816326531No Hit
GAAAAGGGAGAAGAAGAAAGGGAGGAAGAACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGCGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAAGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCAG10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCAGGGGCGGCAGGTGGGGCGGGAGGATGCGCGCGGCCCGCGCCCC10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCCGGTGTTGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.5102040816326531No Hit
GGCTTTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.5102040816326531No Hit
GTTTCCAGGTCACGGGTAACGGAGCGTAGACCAGGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA10.5102040816326531No Hit
GCACAGGGCGGATAAGCATTGGAGGAAGTACTCAGAGGGAAGCAGCGCCGCCTGGCAGGTAGCGAAGGGGCCCTG10.5102040816326531No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCACCTGGCAGGTCGCGAAGGGGCCCTT10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCTGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.5102040816326531No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAGCTGGAGGACCGCNTTGACTACCTGA10.5102040816326531No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCAGTCCAGCACGTCCC10.5102040816326531No Hit
GCACAGGTCGTATACGCGTTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCAATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.5102040816326531No Hit
GTTTCCAGTTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGAAGCGTGAAGATGCCGAT10.5102040816326531No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGTGGGGCCCCCTCAGTGA10.5102040816326531No Hit
TAGACAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTGCATTCATCTCGTATGCCGTCTTCT10.5102040816326531RNA PCR Primer, Index 45 (96% over 25bp)
GTAGTGCTTCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.5102040816326531No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTACCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA10.5102040816326531No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTTCTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCCCCTCCTGGCAGGTCGCGCAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACACAGAGGGACTCAGCACCGCCTGGCAGGTCGNGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGACTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAGCTGGAGGACCGCATTGACTACCTGA10.5102040816326531No Hit
TCTCGTGCTCACAGATGCCGCCCAGCGGCTCCGGTGCTGCAGGTTGTGCGAGAGGCTGCGCGGGTCCCGCGCCCC10.5102040816326531No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCGTTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.5102040816326531No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGCTGCTGTGTGCCCCCTCAGTGT10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTTTAGAGCAGCGTGAAGATGCCGAT10.5102040816326531No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCTCTCTGTCCACNCTTAACGGCCCC10.5102040816326531No Hit
GCACAGGTCGTAGACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCGGGAAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGATCAGCGTGAAGATGCCGAT10.5102040816326531No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTACAGCACGGCCC10.5102040816326531No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTCTGCCCCTGCGCACATT10.5102040816326531No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCTCCCCCTGCACCAGGGGAACCAGTCG10.5102040816326531No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTGTCCGCTCTTAACGGCCCC10.5102040816326531No Hit
GCACAGGTCGTATCCGCATTGGCGGAAGTCCTCAGAGGGACTCAGCACCGCCTGGCAAGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCAGGGCCAGCGCCAC10.5102040816326531No Hit
CCTTTAACACGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAATCAGCACACTTTCAACAACTCCTGTT10.5102040816326531No Hit
GCAAAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCGTTGGCGGAAGTACTCAGAGGGACTGAGCACCGCGTGGCGGGTCGNGAAGGGGCCCTG10.5102040816326531No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTCCTGCAATCAGCACTCTTTCAACAACTCCTGTT10.5102040816326531No Hit
GCACAGGTCGTATGCGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCGCTG10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCTTGTAGAGCAGCGNGCAGATGCCGAT10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGACGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGTGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCGACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.5102040816326531No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCTCCCCCTGCACCAGGGGAAGCAGTGG10.5102040816326531No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAATCAGCACCATTTCAACAACTCCTGTT10.5102040816326531No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCTTCTTTTTTCTTCCTGGCAGTATTAT10.5102040816326531No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTGCATTCAGCTCGTATGCCGTCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGTACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAATACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCGCTCAGTGA10.5102040816326531No Hit
GCACAGGTCGTATACGCCTTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGGAGGGGCCCTG10.5102040816326531No Hit
TCTCGTTCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGNGACGGGGCCCTG10.5102040816326531No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAATTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA10.5102040816326531No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTTTCGCTCTGTCCACTCTTAACGGCCCC10.5102040816326531No Hit
CATTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACACTCGGCACCCTTTCAACAACTCCTGTT10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGTGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGACCTG10.5102040816326531No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGNGAAGATGCCGAG10.5102040816326531No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCACTAAGCTGGAGGACCGCATTGACTACCTGA10.5102040816326531No Hit
GCACAGGGCGTATACGCATTGGCGGAAGTACTCAGAGGGACTAAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCCAGCCCTCCTTGGTCACTGTCGCTCTGTCCACNCTTAACGGCCCC10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGTGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGNGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGATCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTAGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GCACAGGTCGTATACTCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT10.5102040816326531No Hit
GCTTCCAGTTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCTCCCTCAGTGA10.5102040816326531No Hit
GCCCAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG10.5102040816326531No Hit
GTTTCCAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGAGGCCC10.5102040816326531No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCACGCGCCCC10.5102040816326531No Hit
CATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTGGGGGTTCCGGAGCTGC10.5102040816326531No Hit
GTAGTGCTGCTCGTCCAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.5102040816326531No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGACCCTG10.5102040816326531No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGTCCACTTCTGCAATCAGCACCCTTTCAACAACTCCTGTT10.5102040816326531No Hit
TCTCGTGCTCGCGGATGCCGCCCAGCGGCTCCGGGGCGGCGGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.5102040816326531No Hit

[OK]Adapter Content

Adapter graph