FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGTTGCACTGTGTTTGAGTAGAACGTGTAAATGAATTGTTCCCACCTTTGGTTTGCCAGTAAGTGACTGGA11.7543859649122806No Hit
GCATCAGGGAGGCTCTGGCCTCTCGCCCTCAGGGCTGGGGGCTTCTTCACATGGTCATCAAAGACTTGGCCAGTT11.7543859649122806No Hit
CCTGATTGGGTTAAAATGAGTAATGGCGGATAATTTTTAATTTGGGGTAGTGTTGCTAATAGCCACACTCACTGG11.7543859649122806No Hit
GACAAGATGGGGACGGAGTCTCACCGTCACGCACTCTCAACAATTTGTTAATGCCGACCGACCCACGTTCTAGCC11.7543859649122806No Hit
GATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACGA11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGGAGGTGGCCGATAGAGCTCTCTCTTATACACATCTCCGAGCCAACGAGACTCC11.7543859649122806No Hit
AGGCCAACAGCGAGGCCTGCCGGGACGGCCTTCGGGCAGTGATGGAGCTGTCTCTTATACACATCTCCGAGCCCA11.7543859649122806No Hit
TTTATAGAGTATCTTAAAAATCCTTATCAAGTAAGATATTAACTTTACCTTTATAAATCTTTGTGTGAAATGAAA11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCTCTGTGTGAATTGTGGTGAGATTTTGCTGTC11.7543859649122806No Hit
CATGGAGGACGAGTGATAGTTGTTGGCAGCAGAGGTACTATTGAAATAAACCCACGAGACACCATGGCAAAGGAG11.7543859649122806No Hit
GTAGCCCTAAGTGGTACTAACTTTCCTTCATTCAACCCACCTGCGTCTCATACTCACCTCACCCCACTGTGGCTG11.7543859649122806No Hit
GAACTGAGTATATGTATATTTCATCAGGGGAGGGGCTAGGACTCCCACTTGGAGGCCTCAGGAGTTCTGCTGGGC11.7543859649122806No Hit
GTGAAGCTCTAGGCCTGCTACTGCCTGGGGACACGGACTTCTGCTGCTGCCACCTGCGCCAGCCCTACCTTCCAC11.7543859649122806No Hit
CAACCGTGCCCTATGTATCTCTTCCATTTGGCTGTTCGTGAGTTGTACCCTTTATGACAAAGGCATAAAGGTAAG11.7543859649122806No Hit
ACCTGTACTTCCAGAGCGGAAGCGAGCCCAAGAGCTGCGACAACCACCCCCATGTACTCTGCGTTGATCTGTCTC11.7543859649122806No Hit
GGCAAAAGTGAACCTGCACTGTGGCGTGGGTTCATGCAGGAAAGTGTCCAGTCAAGGCCCATGTACTCTGCGTTG11.7543859649122806No Hit
GGGCATAAGAGCAAAGCTTTTTGAAAAACTTTTGGGTTCACGGGTACACGGTCAGATTTGTTACATAGGTAAACT11.7543859649122806No Hit
CTGCTGTACTCATCACAAAATGGGAGAGAGGGCTCTCAATAGATCATTCCCTTTGTTTCTCCCCTGGGCTTCTTG11.7543859649122806No Hit
ACTATATCTTTTACAGAATTAAACCATATGCTGGTAATTTATGCCTGCAACCCTACCTCTTAGGAGTCTAAAGTA11.7543859649122806No Hit
GCCGCGGACAAGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCGGAGAGCCTAC11.7543859649122806No Hit
GGTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCTCTGTGTGAATTCTGTCTCTTATACACATC11.7543859649122806No Hit
GTCCAGAAGCAGAGCCCCCAGCTGGAGGTCAGAGTGCAGGCTCCTGTATCCCGTCCTGTGCTCACTCTGCACCAC11.7543859649122806No Hit
GTGTAGGAGGAGTCCAGCTTAGGACCGGGCCAGAGCCAGGACAGGCTCGGGGAGGGGGCCTCTGCAGGTTCAGAG11.7543859649122806No Hit
CCTGGAAGCAGAGAGACTGCTTGTATAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATA11.7543859649122806No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTCTGTCTCTTAT11.7543859649122806Clontech Universal Primer Mix Long (96% over 26bp)
GTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATCTGTCTCTTATACACATCTCCGAGCCCACGAGACATCTC11.7543859649122806No Hit
GCCTTGCCCAGGGCGGCGGCCGGGCTGGGGTTTTCCATCACCCGGCAGGAGCCTGTCTCTTATACACATCTCCGA11.7543859649122806No Hit
GTGTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCAC11.7543859649122806No Hit
CAAACTAGCGTCTCAACTACCCCCCCACACCTGGACTAGTATTTTCTAGGTCTCTGATAAACAGATCACCGACCC11.7543859649122806No Hit
GGCAAAAAAGCACAACTTGACCGTGAACCTGACCACGTTCCGACTGTGGTGTTACGCCCTGTCTCTTATACACAT11.7543859649122806No Hit
GGTTTCTCTGGTCTTCATCTTCCTCAGGATTTTCCCTGGACTTTGACAGCCGGTTTCTTAGAGACATCTTCTCTT11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGGGGGGGCCCATTTCGGCCCTCTGGGATCCCTGGCGCGAATAACACTAAGCCAC11.7543859649122806No Hit
ATCCTGAGCTGTCAGCAGGGCAGTGATTGGTTTCCAGATTTCAAGTCCATGAAACAGGTAGCCAGGGTTGGGGAA11.7543859649122806No Hit
GGTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCTCTGTGTGAATCTGTCTCTTATACACATCT11.7543859649122806No Hit
CACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACACGGTGGAACCCTGTCTCTACTAAATACAAAAGATTAG11.7543859649122806No Hit
CTCCATATGTTGCTCAGACTGGTCTCAAACTCCTGGGATCCTCTTAATGGCTTGCCAGAGTGCCTGTCTCTTATA11.7543859649122806No Hit
CCTCCCCACAGGGACTTCAGCACAGATGGCCGGGAAAATCTGCATTCACCTGAGCTCTGGACCTAAGAGAGGACA11.7543859649122806No Hit
ACATTGGACTTTTACTTGTGCAGTCACTTTAACATACAAATCATCTTTCCTTGGGATCGTTTTAAATTTTCTTGA11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGCAGTAATACGACTCACTATAGGGAGATGGCTCTAACAACCCCTGTCTCTTATA11.7543859649122806Clontech Universal Primer Mix Short (95% over 21bp)
GTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCG11.7543859649122806No Hit
ACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACCTGTCTCTTATACACATCTCCGAGCCCACGAGACATC11.7543859649122806No Hit
GGTATCAACGCAGAGTACATGGGGTTGGGTCAAATGGAGTCACTTTTTGACAACAGCCAGCCGACCAGTCTAGTA11.7543859649122806No Hit
CTGCTGGCCTCTGCCTGTTTTCATTTCCCACTTTGGTTGTGTGGCATTACTTTCAGAATTGCACTTTCCTGCTTG11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCAGGGCGCTTATACACAGAG11.7543859649122806No Hit
ATCAACGCAGAGTACATGGGCAAGTATTACCTGCGGGGGTAGAGCACTGTTTAGGCTAGGGGGTCATGGCGACTT11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGGGGGGGACCATTTCGACAATGTGGTAGAAATCTGTCTCTAAAACACATAACCG11.7543859649122806No Hit
ACTTAGTTATGAGAGCTGATTTTCCATCTCTCCAGGTTGAACTTCTTCATTAGGCCAATCCGTTTGCAAGTCGGC11.7543859649122806No Hit
GGTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTCTCTTATACACATC11.7543859649122806No Hit
CCATGAATGAATCCAGGTGGTCCTTCCAGGTAAGGGCCTCCTTGAAATAAGCAAACCATCCTTTTCTCAATGTCA11.7543859649122806No Hit
GGTATCAACGCAGAGTACATGGGCGGCAGTGCAGCAGTAGATTTATGTACTATACAAGCAGTCTCTCTGCTTCCA11.7543859649122806No Hit
TTTTTGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATC11.7543859649122806No Hit
GTCTTTCCTTTCACCCATTCAGTGGCTAATGAGCTGGAGGCAATTGCGGAACCACAGCCAAATGTTTTAAACCTA11.7543859649122806No Hit
CTTGTTTGTTTACAACAATGCCAACAGCATGCTGGGTAACATTGTAGACTCTTCCAGTTTTGCCATGGTAACACT11.7543859649122806No Hit
GGTATCAACGCAGAGTACATGGGCGGCAGTGCAGCAGTAGATTTATGTACTATACAAGCAGTCTCTCTGCTGTCT11.7543859649122806No Hit
CTTGGGCTGCTTGGCTATGCAAGCCTCCTGCCTGCTGATGGCCACTTCAGGGACAGCCTGGGCCCAGGCACCCAG11.7543859649122806No Hit
GGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCAGGTCAGGAGTTCAG11.7543859649122806No Hit
GACCTCATGATCTGCCCGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGCACCTGGCCTAATT11.7543859649122806No Hit

[FAIL]Adapter Content

Adapter graph