FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGGCGGTGGTGGCAGCAGTGATCCTCTGAACCTGCAGAGGCCCCCTCCCCGAGCCTGTCCTGGCTCTGGCCC11.7543859649122806No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCTGTCTCTTAT11.7543859649122806Clontech Universal Primer Mix Long (96% over 26bp)
CCAAATAATCTGTAAAACAAACCTCCATGACACGAGTTTACCTATGTAACAAATCTGACCGTGTACCCGTGAACC11.7543859649122806No Hit
AGCCTGGGCAACAAAGCAAGACCCCATCTCTACAAAATAAAAATTAGGCCAGGTGCAGTGGCTCACACCTGTAAT11.7543859649122806No Hit
GTACATGGGAGGTTACAAGTTCCAGACTATCTCTGTGTCTGTCTCTTATACACATCTGACGCTGCCGACGAAGGC11.7543859649122806No Hit
CCAGGTATCTGCGGAGCCACTCCACGCACGTGCCCTCCAGGTAGGCTCTCCGCTGCTCCGCCTCACGGGCCGCCT11.7543859649122806No Hit
AACCAGGCCTCCTAACTTCCCGGAAATATTCTTTTCCCCAACCCTGGCTACCTGTTTCATGGACTTGAAATCTGG11.7543859649122806No Hit
GCACTCTGGCAAGCCATTAAGAGGATCCCAGGAGTTTGAGACCAGTCTGAGCAACATATGGAGCTGTCTCTTATA11.7543859649122806No Hit
CAGAGAGACTGCTTGTATAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATACCCTGTCT11.7543859649122806No Hit
CTGTGACCGCTTCCCGGCTCTGCCCTCTTGGCCGAAGTGCCCGCTGCCGGGCGCGGGCCTCAGACAATACAATGG11.7543859649122806No Hit
AGTTAACACCATCCGCAAAGCTAGGACCCTGCTCTCATGAAGCTTGCGTTCCAGTGAGTGTGGCTATTAGCAACA11.7543859649122806No Hit
CCCCTGGAGGCACTACCGCAGAACTTCATGTTCACAGAAACACACGTCATGGCAAGTGTGTCAAAAAGTCATGAC11.7543859649122806No Hit
CCATCGTCTCCAACTCGTCACGACCTGATCCCGCACGGAAGGCCACCCATTGTGCTCGGAAATCAAGCGTCAACA11.7543859649122806No Hit
GCTCCTGCCGGGTGATGGAAAACCCCAGCCCGGCCGCCGCCCTGGGCAAGGCCTGTCTCTTATACACATCTGACG11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGCGGCAGTGCAGCAGTAGATTTATGTACTATACAAGCAGTCTCTCTGCTTCCAG11.7543859649122806No Hit
CTCCATCACTGCCCGAAGGCCGTCCCGGCAGGCCTCGCTGTTGGCCTCTGTCTCTTATACACATCTGACGCTGCC11.7543859649122806No Hit
ATCAACGCAGAGTACATGGGGGTGGTTGTCGCAGCTCTTGGGCTCGCTTCCGCTCTGGAAGTACAGGTCTGTCTC11.7543859649122806No Hit
AGGAAGCCCAGAAGTCAGAGAGAGTGCGGGGAGAGTTCAGAAATCTTCTGATGCACTGACGAAAAGGGAATATGC11.7543859649122806No Hit
TATCAACGCAGAGTACATGGGCCTTGACTGGACACTTTCCTGCATGAACCCACGCCACAGTGCAGGTTCACTTTT11.7543859649122806No Hit
CTACTTTAGACTCCTAAGAGGTAGGGTTGCAGGCATAAATTACCAGCATATGGTTTAATTCTGTAAAAGATATAG11.7543859649122806No Hit
GGGTTGTTAGAGCCATCTCCCTATAGTGAGTCGTATTACTGCCCATGTACTCTGCGTTGATACCTGTCTCTTATA11.7543859649122806Clontech Universal Primer Mix Short (95% over 21bp)
CCATTCCAGCTTGAAGGGCTGCTGCATATTGCTGAAATTCCTCCTTGGTTGAGGAAAAGAGAGTAACTCCAATTA11.7543859649122806No Hit
AGATGGGGTTTCACCATCTTGGCCAAGCTGTTCCTGAACTCCTGACCTGGTGATCCGCCCGCCTCGGCCTCCCAA11.7543859649122806No Hit
GTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGAAGAGTCTACAATGTTACCCAGCATGCTGTT11.7543859649122806No Hit
GTGGTATTCATTGAAAAGAAGCTCTCCACCCACTTGGTATTTCAAGAAAATTTAAAACGATCCCAAGGAAAGATG11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTCGGTTCCAAAAACTGTCTCTTATACACATC11.7543859649122806No Hit
GGTCAAGGCCTTGTCCTCTCTTAGGTCCAGAGCTCAGGTGAATGCAGATTTTCCCGGCCATCTGTGCTGAAGTCC11.7543859649122806No Hit
GCATGTGGTGACGTAATGAGATTACAGATTCAAGTGGATGAAAAGGGGAAGATTGTGGATGCTAGGTTTAAAACA11.7543859649122806No Hit
ATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATCT11.7543859649122806No Hit
CCTGGAAGCAGAGAGACTGCTTGTATAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATA11.7543859649122806No Hit
CAATTCTGGATGGCGCAACAACTGTGCGAAGGTGGCCTGTCACTTATGGAGATGTGAGGGTGCCGACGGAGGGTT11.7543859649122806No Hit
GCTTGATGATGGCCTGGGCTTTGAATACGTGATGTTCTACAATGACATTGAGAAAAGGATGGTTTGCTTATTTCA11.7543859649122806No Hit
GGCCCTAAGCCGCTAATTAACAACATGAGTCACTTTCATCTGGTCCAGGCTTGTCGCCCCCTCGATGGAACACAG11.7543859649122806No Hit
GGGAGGTGGTTCCACCACAGGGAGCTGAGTGGTTCCCCACAATCTTCTCATCAAGGTAGAAGGAATACAGGATCG11.7543859649122806No Hit
GCGTGGTAGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGG11.7543859649122806No Hit
ATCCTGAAGAACTTCGAGAAGCTCAAGAAGCCCAGGGGAGAAACAAAGGGAATGATCTATTGAGAGCCCTCTCTC11.7543859649122806No Hit
AATTAATGCAGACCCTGCCAGGACATACATAACATAACAGGAGACTCAGTGTACAAAACCAGCACAGCAGCAGCA11.7543859649122806No Hit
GGAAGCTGCCGCCATCCCCCTGGGTGCCTGGGCCCAGGCTGTCCCTGAAGTGGCCATCAGCAGGCAGGAGGCTTG11.7543859649122806No Hit
CCCAAGTAGCTGGGATTAAAGGCATGCGCCACCACGCCTAGCTAATCTTTTGTATTTAGTAGAGACAGGGTTCCA11.7543859649122806No Hit
GAACACAAATGTGCCAAGAATCCAGTCACTTACTGGCAAACCAAAGGTGGGAACAATTCATTTACACGTTCTACT11.7543859649122806No Hit
GTGCTGGGATTACAGGCTTGAACCACCGTGCCTGGCCGTTTTACTTACCTTTATGCCTTTGTCATAAAGGGTACA11.7543859649122806No Hit
TGCTCCACTTTTTCAATTCTCTCTCCATTCTTCAGTAAGTCAACTTCAATGTCGGATGGATGAAACCCAGACACC11.7543859649122806No Hit
CTACAATAATCTTCACGTGGAGTGGGGGGCTTGTAGACTCGCTTGTTAGGTCTCTGATAAACAGATGACACGGAC11.7543859649122806No Hit
GGTTACGGAAGCGGCGGGAGGAGAAGCTCCTTCGCGACGCCCAGCAGAACTCCTGAGGCCTCCAAGTGGGAGTCC11.7543859649122806No Hit
CTCTATCGCCGTCCACCGCAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTGACGCTGCCGACGAAGGC11.7543859649122806No Hit
CAAAATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCTGTC11.7543859649122806No Hit
ATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACCTGTCTCTTATACACATCTGACGCTGCCGACGAAGGCTT11.7543859649122806No Hit
GTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCCTGTCTCTTATACACATCTGACGCTGCCGAC11.7543859649122806No Hit
ATTCGGAGTTTGCTAAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGCTCTACCCCCGCAGGTAATA11.7543859649122806No Hit
AGTGGGGAATGCCAAATGAAGGGGTGCTTACATGGGGACACAAAATTCCAAATCAGCCACAGTGGGGTGAGGTGA11.7543859649122806No Hit
TATATGCCCAGAGCAGCGGTCGGTCGGACTCAGAAACCGGGACGAGGCGTTGATCACTGGCTAGTATCCACAGAG11.7543859649122806No Hit
GGTGGTGGAAGGTAGGGCTGGCGCAGGTGGCAGCAGCAGAAGTCCGTGTCCCCAGGCAGTAGCAGGCCTAGAGCT11.7543859649122806No Hit
GGGGACCAGCTGTCCGAGCGTGTGGCGGGCGGCGTGCGGCGGGGTGGTGTGCGGTGAGGGCTGGCGCTGATACGC11.7543859649122806No Hit
GCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATC11.7543859649122806No Hit
GGATGGTATTTAAAAATGTAGAACACAATGAAATTTGTATGCCTTGATTTTTTTTTCATTTCACACAAAGATTTA11.7543859649122806No Hit
AATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACACATC11.7543859649122806No Hit
GGCGTAACACCACAGTCGGAACGTGGTCAGGTTCACGGTCAAGTTGTGCTTTTTTGCCCTGTCTCTTATACACAT11.7543859649122806No Hit

[FAIL]Adapter Content

Adapter graph