FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84
Sequences flagged as poor quality0
Sequence length75
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG1214.285714285714285No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTTCT67.142857142857142TruSeq Adapter, Index 7 (95% over 23bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTT55.952380952380952TruSeq Adapter, Index 7 (95% over 21bp)
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA22.380952380952381No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCGTCGCGTATGCCGTCTTCT11.1904761904761905TruSeq Adapter, Index 14 (95% over 21bp)
GCACAGGTCGTATACGCATTGGCGGAAATACTCAGAGGGACTCAGCACCGCATGGCAGGTCGCGAAGGGGCCCTG11.1904761904761905No Hit
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA11.1904761904761905TruSeq Adapter, Index 7 (96% over 28bp)
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCAGCTCGTATGCCGTCTT11.1904761904761905No Hit
CAACCAAAAGACCAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTNGTATGCCGTCTT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGCCTGTCTCTTATACACATCTCCGCGCCCCCGCGACCATCGACCCTATCGTATGCCGTC11.1904761904761905No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCTTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT11.1904761904761905No Hit
CAAGCAATCAAAGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGACGTCTTCT11.1904761904761905RNA PCR Primer, Index 14 (95% over 21bp)
ACATCAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCG11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGCCCATCGACCATCTCGTATGCCGTCTT11.1904761904761905TruSeq Adapter, Index 7 (95% over 21bp)
CAAGCAATCAAGGCCAGGCTCTTATACACATCTCCGAGCCCACGAGACAATCAACCAGCTCGTATGCCGTCTTCT11.1904761904761905RNA PCR Primer, Index 14 (95% over 21bp)
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCCAATTTCAGCTCCATTGGGATCATG11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCCT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCCTCT11.1904761904761905RNA PCR Primer, Index 14 (95% over 21bp)
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGNGAAGGGGCACTG11.1904761904761905No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTGTCCACTCTTAACGGCCCC11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTATACACATCGCCGAGCCCACGAGACCATCGACCAGCTCGTATGCCGTCTTCGG11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCAACTCGTATGCCGTCTT11.1904761904761905No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGTGCCCGCGCCCC11.1904761904761905No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTT11.1904761904761905TruSeq Adapter, Index 7 (95% over 21bp)
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT11.1904761904761905No Hit
CTTCAGTGGAGCCCTCAGTTGTCTGTCTCTTATACACGTCTCCGAGCCCACGAGAACATCTGCCGTCTCGTATGC11.1904761904761905No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTAGGCCGTCTT11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCATCTT11.1904761904761905No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAATCAGCACCCTTTCAACAACTCCTTTT11.1904761904761905No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACTGCGCTGCATCTCGGAGGCCGTCTTCTGCTTGAAAAAAAGAAAAGC11.1904761904761905No Hit
CAAGCAAAAGAACAGCCGGTCTCTTATAAACATCTCAGAGCCCAAGAGACCATCGACCAAATCGTATGCCGAATT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAGCATCACTCTGCACAGCATCATCCAT11.1904761904761905No Hit
GGTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTTCTTGGCCTTGTCGCGGCTCT11.1904761904761905No Hit
CCACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGAACATATCGTATGCCGTCTT11.1904761904761905No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTATG11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGGCCATCGCGTATGCCGTCGTCT11.1904761904761905No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGNGGCCCGCGCCCC11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCCTCTAGTATGCCGTCTTCT11.1904761904761905TruSeq Adapter, Index 16 (95% over 21bp)
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCATG11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATATCGTATGCCGTCTT11.1904761904761905No Hit
CAACCAAAAGAACAGCCTATCTCTTATATACATCTCCGAGCCCACGAGCACATCGACAAACTCGTATGCCTACAT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGATACCATCGACCATCTCGTATGCCGTCTTCT11.1904761904761905RNA PCR Primer, Index 16 (95% over 24bp)
CAAGCAATCAAGGCCAGGCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTTCT11.1904761904761905RNA PCR Primer, Index 16 (95% over 24bp)
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGCGCCCACGAGCCCATCGACCATCTCGTATGCCGTCTT11.1904761904761905TruSeq Adapter, Index 7 (95% over 21bp)
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCGGGTGTGGCGGGAGGCTGCGCGGGTCCCGCGCCCC11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCTAGCCCACGAGACCATCGACCATCTCGTATGCCGTCAT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCAACTCGTCTGCCGTATTCT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCACGAGACCATCGACCATCTCGTATGCCGTCTTCTG11.1904761904761905RNA PCR Primer, Index 16 (96% over 25bp)
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGNGAAGATGCCGAT11.1904761904761905No Hit
AAAGTCTCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGAACATCTCGTATGCCGTCTT11.1904761904761905RNA PCR Primer, Index 47 (95% over 23bp)
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCCGGTCGCGAAGGGGCACTG11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCAGCTCGTATGCCGTCTT11.1904761904761905No Hit
AAACCAAAAGAACAGCCTGTCTCTTATACACATATCCGAGCCCACGAGACCAACGAACATCTCGTATGCCGTCTT11.1904761904761905RNA PCR Primer, Index 7 (95% over 21bp)
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCGCGTATGCCGTCTACT11.1904761904761905No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCGCC11.1904761904761905No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGACCCACGAGACCATCGACCATCTCGTATGCCGTCTTC11.1904761904761905RNA PCR Primer, Index 16 (95% over 23bp)
CCTGACTCACATCTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACAAG11.1904761904761905TruSeq Adapter, Index 7 (96% over 28bp)
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGGGGCACCAGCAGCGGGTAGCCGTCAA11.1904761904761905No Hit
CAACCAAAAGAACCGCCTGTCTCTTATACACATCTCCTAGCCCACGAGACCATCGACCATCTCTTATGCCGTCTT11.1904761904761905No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCAGCTCGTATGCCGTCTTCT11.1904761904761905RNA PCR Primer, Index 14 (95% over 21bp)
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCATCGACCATCTNGTATGCCGTCTT11.1904761904761905No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC11.1904761904761905No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCAACGAGACCATCGACCATATCGTATGCCGTTGT11.1904761904761905No Hit

[FAIL]Adapter Content

Adapter graph