FastQCFastQC Report
Wed 31 Aug 2022
EGAF00002295726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6
Sequences flagged as poor quality0
Sequence length75
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCGCGCCCACGAGACCCACGTATATCTCGTATGCCGTCTTCTGCTTGCAAAAAAAAGGGGGGGGGGGGGGGG116.666666666666664Illumina PCR Primer Index 6 (96% over 27bp)
CATCTCCGAGCCCACGAGACGGATAACAAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAACGGGGGGGGGGGGG116.666666666666664RNA PCR Primer, Index 36 (96% over 28bp)
CTCCGAGCCCCCGAGACCATCGACCATCTCGTATGCCGTCTTCTGGTTGAAAAAAAAAAGGGGGGGGGGGGGGGG116.666666666666664RNA PCR Primer, Index 14 (96% over 26bp)
AGACAGGTCCAGGGTGGACATGGGCACGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTC116.666666666666664No Hit
GTATAAGAGACAGCGTGCCCATGTCCACCCTGGACCCTGTCTCTTATACACATCTCCGAGCCCCCGAGACACTCG116.666666666666664No Hit
CATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGGGGGGG116.666666666666664TruSeq Adapter, Index 4 (96% over 28bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)