FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160
Sequences flagged as poor quality0
Sequence length75
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT6440.0No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT1811.25No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAAAAACGGAGTGGTGCCATTCAGGTA53.125No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCTCCCCCTGCACCAGGGGAAGCAGTGG42.5No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTTCAGAATGGCCGGGATGCTGGTGGC42.5No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGTCGAT31.875No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTGGAAGGCGGGGACCCAACCTTCCCAC31.875No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCGCTT31.875No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGTCCTGCTTGAGGATGGGTAGGGGGAT21.25No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTNTTCGCGGCTCTT21.25No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTNGTCGCGGCTCTT21.25No Hit
GTCAGTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTGGAATGCGGGGACCCAACCTTCCCAC10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTATCGCGGCTCTT10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACAACAATGCTGGCGGGGAACGTGTAGAGCAGCGTGAAGATGCCGAT10.625No Hit
GTCGTTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCTACGTGGCGCTGCTTGGCCTTGTCGCGGCTCTG10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGGCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
GTCCTTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGGCGCAGCTCTT10.625No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAAAAACGTAGTTGTGCCATTCAGGTA10.625No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACACTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCGTCTTCTG10.625TruSeq Adapter, Index 1 (95% over 24bp)
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAACAACCGGAGTGGTGCCATTCAGGTA10.625No Hit
GTCATTGTCACTGGTCAGCTCCAACACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTATGCACAAACTCGTATGCCGTCTT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCCCGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
GTAGCGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGAGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACCATCTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCGTCT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGGCTCCACGTTGCGCTGCTTGGCCTTGGCGCGGCTCTT10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCAGAT10.625No Hit
CAAGCAATCAAGGCCAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCGTC10.625No Hit
GTCATGGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
GTCATTGTCACTGTTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTAGCCTTGTCGCGGCTCTT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGTACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCTGCTCTT10.625No Hit
GGTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCT10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGTCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCATGTAGAGCAGCGNGAAGATGCCGAT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTTGCCTTGTCGCGGCTCTT10.625No Hit
GTCATTGTCATGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTTG10.625No Hit
GTCGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCTGCTCTT10.625No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTGGAAGGCGGGGAACCAACCTTCCCAC10.625No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAAAAACGGAGTGGNGCCATTCAGGTA10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCCCTT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCTTCTCCACGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTNTTCGCGGCTCTT10.625No Hit
GTCCAGGGTGGGCATGGATTGAAGGGCAGCGGGCACGGGGGGAACGGAGTCGTGCTTGAGGAAGGGTAGGGGGAA10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTCTAGAGCAGCGTGAAGATGCCGAT10.625No Hit
GTCATGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTTT10.625No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCGCAGGAGGAGAAAAAACGGAGTGGTGCCATTCATGTA10.625No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTTCATAATGGCCGGTATGCTGGTGTC10.625No Hit
GTCATGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTTG10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAATATGCCGAT10.625No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTGGCAGGCGGGGACCCAACCTTCCCAC10.625No Hit
GTAGTGCTGCTCGTACAGGTAGCAGTCCACCACAGTGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT10.625No Hit
CCTGACTCACGTTTCCTTATTGCTAGGATGTTCACAGAGCCAACGTCCTGGAAGGCGGGGACCCAACCTTCCCAC10.625No Hit
CAAGCAATCAAGGCCATTCTCTTATACACCTCTCCGATCCCACGAGACGATGCACAAGCTCGTATGCCGTCTTCT10.625RNA PCR Primer, Index 36 (95% over 22bp)
GTCATTGACACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.625No Hit
CCTGACTCACGTTTCCTTATTTCTGTGATGTTCACAGAGCCAACGTCCTGGAAGGCGGGGACCCAACCTTCCCAC10.625No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACGATGCACAAGCTCGTATGCCGTCTTCT10.625TruSeq Adapter, Index 4 (95% over 21bp)
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.625No Hit

[OK]Adapter Content

Adapter graph