FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002295880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002295880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences241
Sequences flagged as poor quality0
Sequence length150
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCG3514.522821576763487No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG3012.448132780082988No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG166.639004149377594No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGC166.639004149377594No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC104.149377593360995No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGG93.7344398340248963No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT83.319502074688797No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTG83.319502074688797No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC62.4896265560165975No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCT62.4896265560165975No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTT62.4896265560165975No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCG62.4896265560165975No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGA41.6597510373443984No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTT41.6597510373443984No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAG31.2448132780082988No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGC31.2448132780082988No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGT31.2448132780082988No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAG31.2448132780082988No Hit
TGAATGAGGTCAAGAGGATCTGGTGAGCCCTGGCAGAGAGGACTTATATA20.8298755186721992No Hit
ATAGCAGAATCATCGTGGTCTCCAGAAGTGCCCACGTTGCTCTTGCCGCT20.8298755186721992No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGT20.8298755186721992No Hit
GTTTCCAGGTCAAGGGTAACGGAACGTGGACCAAGTCCCGCGTCTCCTCC20.8298755186721992No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAAT20.8298755186721992No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAG20.8298755186721992No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAAT20.8298755186721992No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC20.8298755186721992No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTTTTGACTAGACAAACCAC10.4149377593360996No Hit
AGCCAAAGGGTCTAAAGAAGTGGAAGTCGCTCTTGTTCGGAAAGACAAAG10.4149377593360996No Hit
CGTCCTTTACTTGTCATGCGCTCTAATGTCTGGGCATCTGGCTCTGATGT10.4149377593360996No Hit
TGGTTGAACAGCATCGGACTCAGATAGTAATCCACGCTCTTTTAAAATGT10.4149377593360996No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCACTAGCACTCCTTGGTCACTGT10.4149377593360996No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG10.4149377593360996No Hit
CATTTAACAAGGAGGCGTGTCAGCACGACAGTGGTGGCCACCTTTGCAAT10.4149377593360996No Hit
GTCCAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG10.4149377593360996No Hit
CAAGCAATCAAGGACAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAG10.4149377593360996No Hit
TGGAATAAGTTCAGTCTCACAGCATTTTACTGGCACCGGGTTATTCTTTT10.4149377593360996No Hit
TCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTCTTCTGCTTG10.4149377593360996Illumina PCR Primer Index 10 (96% over 28bp)
CCTGACTCACATTTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG10.4149377593360996No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACACTCGCTCATCTCGTATGCCG10.4149377593360996No Hit
AAAATTAAAATTTTTACCGCTTCGGCGTTATAACCTCACACTCAATCTTT10.4149377593360996No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG10.4149377593360996No Hit
TCTGACTCACGTTTCCGAGCCCACGAGACACTCGCTAACCTCGTATGCCG10.4149377593360996No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACACTCGCTAACCTTGT10.4149377593360996No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGACATACTCATTT10.4149377593360996No Hit
CTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGT10.4149377593360996No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCC10.4149377593360996No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATCCTTTCTCTCT10.4149377593360996No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCCCGCCATTTGCACCCGC10.4149377593360996No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.4149377593360996No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGATGCACAACCTCGTATGCCG10.4149377593360996No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAG10.4149377593360996No Hit
TCTCGTGGGCTCGGAGATGTGTATAAGAGACACTCGCTAATCTCGTATGC10.4149377593360996No Hit
TCTCGTGCTCGCAGTTGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCG10.4149377593360996No Hit
AACTGTAACTTACACTGACTCCGAGCCCACGAGACGTGCATTCATCTCGT10.4149377593360996No Hit
CCTTTAACAAGTATGCCTGTCAGCATCACACTGGTGGCCACTTCTGCAAT10.4149377593360996No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCTCTTGCCACCTTCCCATAAG10.4149377593360996No Hit
CTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGA10.4149377593360996No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACACTCGCTAAGCTCGTATGCCG10.4149377593360996No Hit
CATAGTTACCTTCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCG10.4149377593360996No Hit
CTCTCAGCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGTCTTC10.4149377593360996Illumina PCR Primer Index 10 (95% over 22bp)
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACACTCGCTAATATCGT10.4149377593360996No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCCGCGGGACTCAGCACCG10.4149377593360996No Hit
AGGGTCGGCATCAAAAGCAATATCAGCACCAACAGAAACAACCTGATTAG10.4149377593360996No Hit
TTTCATGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGCTTTGC10.4149377593360996No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTCGATGGTCGACATT10.4149377593360996No Hit
CGTTTGCTGTTGAACTAAGTCAACCTCAGCACTAACCTTGTGAGTCATTT10.4149377593360996No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCAATCCTCATCTCGT10.4149377593360996No Hit
GCACAAGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG10.4149377593360996No Hit
GTCATTGTCACTGGTCAGCTCCGAGCCCACGAGACACTCGCTAATCTCGT10.4149377593360996No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGCGGAGAA10.4149377593360996No Hit
AATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAGC10.4149377593360996No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCTCGGGCACGGGGGGCACTGCGT10.4149377593360996No Hit
CCTGACTCACATTTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCG10.4149377593360996No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGGATAACAATCTCGTATGACG10.4149377593360996No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGACTCCGGGGCGGCAGGTGGGGCG10.4149377593360996No Hit

[FAIL]Adapter Content

Adapter graph