FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002296272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002296272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences283
Sequences flagged as poor quality0
Sequence length75
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10938.515901060070675No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT5820.49469964664311No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTTCAGAATGGCCGGGATGCTGGTGGC207.06713780918728No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTNGTCGCGGCTCTT134.593639575971731No Hit
GGTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCT41.4134275618374559No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTNGTCGCGGCTCTT31.0600706713780919No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCTTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT20.7067137809187279No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCCCTT20.7067137809187279No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCGCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT20.7067137809187279No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACTTTGCGCTGCTTGGCCTTGTCGCGGCTCTT20.7067137809187279No Hit
GTCATTGTCACTGTTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTTCT10.35335689045936397RNA PCR Primer, Index 36 (95% over 24bp)
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGTCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCATCTCCAGCACCTTCTGCTGCTTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTTG10.35335689045936397No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTACGAGCCCACGAGACGGATAACAATATCGTATGCCGTCTT10.35335689045936397No Hit
GGTCATTGTCACTGGTCAGCTCCAGCACCTTATGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCATTGTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTT10.35335689045936397TruSeq Adapter, Index 4 (95% over 21bp)
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCGT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTG10.35335689045936397No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCACAGCTTTCAGAATGGCCGGGCTGCTGGTGGC10.35335689045936397No Hit
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCATCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGTCCTTGTCTCGGCTCTT10.35335689045936397No Hit
GTCATTGNCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTAGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCCCTTGTCCTCTCCCTCCCCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCGCCACGTTGCGCTGCTTGGCCTNGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTATCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGGTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTTCTTGGCCTTGTCGCGGCGCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTTCGTCTCCACGTTGCGCTGCTTGTCCTTGTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAGATCGTATGCCGTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAACTCGTATGCCGTCTT10.35335689045936397RNA PCR Primer, Index 36 (95% over 21bp)
CAAGCAAAAGAACAGCCTGTCTCTTTTACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGCCGTCTT10.35335689045936397RNA PCR Primer, Index 36 (95% over 22bp)
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACTTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGTACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCTCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAACTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTACGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTATCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACATTGCGCTGCTTAGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCCCTGGTCAGCTCCAGCCCCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTGCAGAATGGCCGGGATGCTGGTGGC10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTGGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCGCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTTTCTCCACGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCATGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTTG10.35335689045936397No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGGCGGATAACAATCTCGTATGCCGTCTTCT10.35335689045936397TruSeq Adapter, Index 4 (95% over 23bp)
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTTTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACGCATCCTGCAAAGCTTTCAGAATGGCCGGGATGCTGGTGGC10.35335689045936397No Hit
CTTAAGTGGAGCATTCAGTTGTCTGTTTCTTTACACATCTCCGAGCCCCCGAGACGGATGCCAAGCTCGTATGCC10.35335689045936397No Hit
GTCATTGTCACTAGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTNGTCTCGGCGCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGACGTCTT10.35335689045936397RNA PCR Primer, Index 36 (95% over 21bp)
CTTCATTGGAACATTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAATCTCGTATGC10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACTTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGGCGCGGCTCTT10.35335689045936397No Hit
GTCATTATCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATAACAAGCTCGTATGCCGTCTT10.35335689045936397RNA PCR Primer, Index 36 (95% over 21bp)
GTCATTGTCACTGGTCGGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTATCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTTCTTGACCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACTTTGCGCTGCTTGGCCTTTTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGTCCACGAGACGGATAACAACCTTGTATGCCGTCTC10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCGCCTTCTGTTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAAACGGATAACAATCTCGTATGCCGTCTT10.35335689045936397RNA PCR Primer, Index 36 (95% over 22bp)
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCACTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTTCAGAATGGCAGGGATGCTGGTGGC10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTTCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGATCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCGCTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTTG10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTACTGTGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCGTGTCGCGGCGCTT10.35335689045936397No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGCCCTTGTCGCGGCTCTT10.35335689045936397No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTATAACAATATNGTATGCCGTCTT10.35335689045936397No Hit

[OK]Adapter Content

Adapter graph