FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002296441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002296441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32.6785714285714284No Hit
ATTGACCACTGTCTCTTTTCAGCCATACCCGGATGGTTCTGTCCTCGCTGGCCGTGATCACGCCGTCCTCCTTGG21.7857142857142856No Hit
CTGCTTGTATAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATACCTGTCTCTTATACAC21.7857142857142856No Hit
ACCCTTCCCCAAGCCTTTTCCGCCTTTGCCGCGACCAGACATGATCTGTCTCTTATACACATCTGACGCTGCCGA10.8928571428571428No Hit
GCATACAAGCTCAGAGAGCTCGTGGAGACCCTCCAGGTGAAGATGGTCTCCTTTGAGCTCTTTCTGGCCAAAGTC10.8928571428571428No Hit
CTCCTGGGCACGGGTGTAATCAGCAGAAACAAACTGAGTCCAAATATCATACTCTGGGAAGCAGTGGTCTACACA10.8928571428571428No Hit
AATATAAAAAAAAATTAAATAAAAAAAATAAAAAAAAACAAAAACTCAAATCCAAAAAAACACAAAAAAAAAAAA10.8928571428571428No Hit
ACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTCTGTCTCTTATACACATCTGACGCTGCCGACGAT10.8928571428571428No Hit
CAGAGTACTTAATTAATTTATTTATTAATTGTTTGTGTTAGACACAACAGACGATGCCGACGATAGTGATTGTGT10.8928571428571428No Hit
AAAAAAGACATAGTACGTAAATTGTAATAATCGATTTTACTATGCGTTGATACCACTCTCAAAAACACATCTGAA10.8928571428571428No Hit
AGCCAGAGATGTGGGGGAAGTGCCTGGACTGCATCAATGAGCTGATGGATATCCTGTTTGCAAATCCCAACATTT10.8928571428571428No Hit
AAGCCCTTCAGGCCCGGCGGATTTTCATCTCAGTGCGTTTGAGGGAGTAGTAGAAGCCCTTCCACCTGTCTCTTA10.8928571428571428No Hit
CCCTGGGTGAGATCAAGGAAGTCATCACCGAGCCAGGCCTGAAGTTCAAGCTGCCACCGCCGCTGCAGAACGTCG10.8928571428571428No Hit
ATAAAAAATAAAAATACATGTTTTTTTTTAAAATTTAGAAAATATGGACGAAATCCAGCCTGTATATTATACACA10.8928571428571428No Hit
GAGTACTTATTTTAATTTTTTATATTTTATTAGTGTGTGTTATACACATCTGACGCTGAAGAAGAAAAGAAGTGG10.8928571428571428No Hit
AAGCTGCACGACGACCCGATTTCAGAAAATCTCCCGCAGACTGGCGGCCAGCCGGGGACCAGCGCACTGGTCCAC10.8928571428571428No Hit
GTGATCCACTTGAAGAAGACAGACAGCTTCTATAGTAAATAAAAAAAATAATTCACTACCGACAATGTACTCTGC10.8928571428571428No Hit
AAGCAAAGTAATTTTAAAATTTAATATTATTTTATATATATAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAATA10.8928571428571428No Hit
AAATCAAAAAAAAATAAAAAAAAAAAAAACAAAAAAACAAAAACACAATTCCAAACAAACACAAAAAAAAAAAAA10.8928571428571428No Hit
GAATAAAATAATATTAAATTTTATTTTAAAATTTAAATAATAACACAAAATAAAAAAAAAAAAAATATTGTATAA10.8928571428571428No Hit
AATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGAT10.8928571428571428No Hit
CGCCATTCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTGTGTTTGG10.8928571428571428No Hit
GAGCAGACCCGTAGCGACTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACTGTCTCTTATACACATCT10.8928571428571428No Hit
CTCTGCCTCTTTCCCCATGAGCCCTCAATCTGTCCTCAAGCTGCGACCTCTGTCCCAGTTGGCAAAAGTGCAAAA10.8928571428571428No Hit
ATACACAAAATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATCT10.8928571428571428No Hit
CACCAACTGGGACGACATGGAGAAAATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCA10.8928571428571428No Hit
AAGTAAAAGATCTGGATCGCCAGCCGCACAGTTAAGTGCGTCTGGTTAACCAGAAAGATGGCAGGCGCACACCGA10.8928571428571428No Hit
GATAACAACGCAAAGAACAATAAATAAATATTATATTTTAATTTATATTATACACATCTGACGCTGCCGACGATA10.8928571428571428No Hit
GAACACAGACTCTCTCATTCGGCCTCCTCCCCAGGGACTATGAGGTGATAGCTGTGTCTTATAGACATCTGACGC10.8928571428571428No Hit
AGACACGGTCGTGATCGCGACCAAGCCTTATGCATTTGATCGGGTGTTCCAGTCAAGCACATCTCAAGAGCAAGT10.8928571428571428No Hit
GACAGGGCTGGGCTCGGTGACTCACACCTGTGATTTCAGCACTTTAGGAGGCTGAGGCGGATGGATCACTTGAGG10.8928571428571428No Hit
GTACATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCTGGA10.8928571428571428No Hit
GGGAGTACCTTTCCAGATGTGAAGCCTGATCTGGAAGATGTGGATGGTGTTCTCTTTGTTTCCTTTGAATCAAAG10.8928571428571428No Hit
TTTTTTGGGTCTGCTCGGAACCGAGCCTCTGTCTTTCGGCCTCCTCCCTGTCTCTTATACACATCTGACGCTGCC10.8928571428571428No Hit
ATAAAAAATAAGAAAACAATTTAAAAAATAAAAAAAAAATACAACATCAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
GTTTTTCATCCTGGGGCTTCACGCGGAACACCTTCTCCCTGTCAAAGCGGACAGGAGCAATTGCAAGAGTGGTAG10.8928571428571428No Hit
TATCAACGCAGAGTACATGGGCGGCAGTGCAGCAGTAGATTTATGTACCTGTCTCTTATACACATCTGACGCTGC10.8928571428571428No Hit
ATACACATCTGACGCTGCCGACGAAGGCTTAGGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAATAAAGGGGG10.8928571428571428Illumina Single End PCR Primer 1 (100% over 29bp)
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGCTGTCTCTTATACACATCTGACGCTGCCGACGATCGCAT10.8928571428571428No Hit
GAGAAAAATTGCTGAGCTCATGCCAGGAGCATCAGGGGCTGAAGTGAAGGGCGTGTGCACAGAAGCTGGCATGTA10.8928571428571428No Hit
ATCACAAACAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
ATATAAAAAAAAAATAAATAAAAAAAAAAAAAAAAAACAAAAACTCAATACAAAAAAAACAACAAAAAAAAAAAA10.8928571428571428No Hit
TATCAACGCAGAGTACATGGGGAGGCCGAAAGACAGAGGCTCGGTTCCGAGCCTGTATATAATAAAAATCTGACC10.8928571428571428No Hit
TCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCTGTCTCTTAT10.8928571428571428No Hit
GGTATCAACGCAGAGTACATGGGCGGCAGTGCAGCAGTAGATTTATGCTGTCTCTTATACACATCTGACGCTGCC10.8928571428571428No Hit
AATCAACGCAAAGTAAATTATTTATATTTTTTATTAAATTTTAATATGCGTTGATACATGACACTAAAACACATA10.8928571428571428No Hit
TCGAAGTTGTGTCTTGAGTGTATCCAGTATACCCCGATCCTTAAACGTCTGGTATAGCTTTTTGCGCAGTTCATC10.8928571428571428No Hit
GCCGACACCCCCGTCACCTCCATCTTGCCGCGCCCTGCGGATGCCTCCCCATGTACTCTGCGTCTGTCTCTTATA10.8928571428571428No Hit
GGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGCTGTCTCTTA10.8928571428571428No Hit
GGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGCTGTCTCTTATACA10.8928571428571428No Hit
CAAAAAACAAAAGTTTTCCAACCACACACGGGAGGGATATGGGTAGGGGGAGGTGTCTGTCCATCCAGCCCTGGC10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGGAGGAGGCCGAAAGACAGAGGCTGTCTCTTATACACATCTGACGCTGCCGACG10.8928571428571428No Hit
GGTGAAGGCCCTGGAGTAGGCGAGCCAGCCGCCAAGGTTGACCTCAGCTTCGGAGCCACCTCTGGATGAACTGCC10.8928571428571428No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTATTTTTTTTAAACACATAGGAGGATACCAAAGATGTG10.8928571428571428No Hit
GGTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACCAAGTCTCTGCTACCGTAAATCTATCACTGTCTC10.8928571428571428No Hit
GGAAGACAGAGGCTCGGTTCCGAGCAGACCCGTAGCGACTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGA10.8928571428571428No Hit
GCGGTGGAGCCGCCACCAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAAC10.8928571428571428No Hit
AAACCGAGCCTCTGTCTTTCGGCCTCCTCCCATGTACTCTGCGTTGATCTGTCTCTTATACACATCTGACGCTGC10.8928571428571428No Hit
GTGAGTCCCTCTTGTCGCAGCACTAGGGCTCGCTTCGCTCTAGAACTAAAGGTTCACATTCACAGTCACAATGAC10.8928571428571428No Hit
ATAAGAGAAATATAAAAAAAATATTATAATTTATATAAACATAACTCTCCCCAAGTACAATGAGTATGTCTCATA10.8928571428571428No Hit
GACAACATGAATACCTATAATAAATATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAA10.8928571428571428No Hit
GTACATGGAGAAAAAAAAGAAAAACAAAAACTCAAATCCAAACAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
CCTTCGAGCAGCTCAAGGCCTGGGTGAACGGCAGCCCGGAGCGCAAAGCCAAGTACGGCGCCTGTCTCTTATACA10.8928571428571428No Hit
GTCTGGAACTTGTAACCTCCCATGTACCTGTCTCTTATACACATCTGACGCTGCCGACGATCGCATAAGTGTAGA10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCTCCGCTGTCTCTTATACACATCTGACGCTGC10.8928571428571428No Hit
GGTATGGGCGCAGAGTGCTTTATTTTTTTTTTTTTGTTTTGTTTTTGGGTGTCTGGGGGAAGTGGAGGAAAGAAG10.8928571428571428No Hit
GGAGACTGCTGTATAGTACATAAATCTACTGCTGCACTGCCGCCCATGTACTCTGCGTTGATACCTGTCTCTTAT10.8928571428571428No Hit
AAGCAGAGAACATTCGGAGTAGGACGAAAGACAGAGGATCAATTCCGAGCAGACCCGAAACGACTAACTGTCTCA10.8928571428571428No Hit
CAAGTTCCAGACTATCTCTGTGTGAATTGTGGTGAGATTTTGTGCAAAAATGAATGGCATTGTGTCGTGGCTGTC10.8928571428571428No Hit
AAACCGAGCCTCTGTCTTTCGGCCTCCTCCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACATCTGACGC10.8928571428571428No Hit
AGCGTCTGCTGCGCGCGCGCGATGCGGTGGCGCGCGAACTCGAAACACTGAAAGCGGAACTGCCTCAGGACGCGC10.8928571428571428No Hit
AACTAATATTAAATTTTAATTAATAATAATAAATATAGGGACTGTCTCATATACACATATGAAGCTGCCGACGAA10.8928571428571428No Hit
GGAAAAAACGAAGAGAACGATAAATTTTTATTATTTTTTTTTTAACAGACAAATATACACATATGAATATGCCGA10.8928571428571428No Hit
ATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATG10.8928571428571428No Hit
GCAATAAACGCAGAGTAAAACTGAGGTAACAAGTACCAGACTATCTCAGCTGTCTCTAATACACATCTGACGCTG10.8928571428571428No Hit
AAACAAGAGTACATTAAATAAAAAAAATTAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
GCGCAGAGAAGTTTATTGTTGATATTTTTGTTATGTGTGGAAATTATAAATATCGACAGAGACGACATGGTGGAC10.8928571428571428No Hit
ACGCAGAGTACAGAGTGTATTGAGTATGATATAGTGTTTTTGTTGTAGGCTCCCATGTACTCCTGTCTCAAAAAA10.8928571428571428No Hit
GTCAAACGGGAGAAGTTCAAGCCTTTGGGCGGGCCCGACGGCGGCAACGGCGGAGATGGCGGCAACGTCATCCTG10.8928571428571428No Hit
ATCTTTTACAGAATTAAACCATATGCTGGTAATTTATGCCTGCAACCCTACCTCTTAGGAGTCTAAAGTAGGGCT10.8928571428571428No Hit
GGCCCTTCAGCGCGGCTTCGACATAGGCGCGGGTCTGCTCCGGCTCGGGCACGCTGGTGAAGCGCAGATTCCACA10.8928571428571428No Hit
ACCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAA10.8928571428571428No Hit
CAATAAGACCAGTCACTTTATAAGAAACACCCAAAGTCATGGCTTTGATAGGATCTCGGTTAACTCTCTTCCATC10.8928571428571428No Hit
GCAGAGTAAATATTATTTTATTAATTTATTTTTATTTTAGACAACAAAAGAAGCCGAAGAAGAAAAAAAAGTAGA10.8928571428571428No Hit
GAGATGTTTCAGTTCACCCTGTTCGCCTCGTATCCCTATGTATTCAGAATACGATACCTTTCGGTGGGTTTCCCC10.8928571428571428No Hit
AATACGAAAATATGATCGACCTAAAAAATAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGGTCTCCTCCCAAAGCGTAACGGAGGAGTTCGAAGGTACGCTAGTTACGGTCGG10.8928571428571428No Hit
GTATCAACGCAGAGTACATGGGAGGTTACAAGTTCCAGACTATCTCTGTGTGAATTGTGGTGAGATTTTGTGCTG10.8928571428571428No Hit
GATATATTATTTAAATTTTTAAATAAATTTTAATCTGCGTTGATACCACACACTAATAAACATATGACGCTGCCC10.8928571428571428No Hit
TTTTTACACAAAATCTCACCACAATTCACACAGAGATAGTCTGAAACTTGTAACCTCCCATGTACTCTGCGTTGA10.8928571428571428No Hit
CTACAGGATCTCATTTGCCTCTTTCAACGTCACACCTGCTGGAGCCACCACCAGTTCAATCCTTGGCGTCATCAC10.8928571428571428No Hit
ATAACAACACAAAAAACAAAAATAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA10.8928571428571428No Hit
GCCGATGTGAACTGCCTGGCCGCCCCCGGACAGAGCCTGCCGCTGCTGGCGGCGATGGAATGGCACGGTGGCTGG10.8928571428571428No Hit
GTAAAAGGGAAGCAGTGGTATAAAATAAGAGTACATGTGATGTATATTATACACATCTGACGCTGCCGACGAAGG10.8928571428571428No Hit
GTAAAAAAGAAAAAAAATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA10.8928571428571428No Hit
GCCTTATCAGTGGGCCAATACAATTGTCCAGGCCAATACACATTCTCAATGCCATCAGACAGCCATGTTTCTTCA10.8928571428571428No Hit
GCATGGTATGTGGGTGACCCTGGACTCGCCACTGGTACCCGCCCTTCCGAGCGGCGCCCTGTCCTGTCTCTTATA10.8928571428571428No Hit
ATCACCACACAGAAAAATTTTATTATTAATTAAAGAAAGAGCCACCCAACCAAACAAACCCAAAGCGACAAAACA10.8928571428571428No Hit
ACGCAGAAAACATCTGAGGAAACAAGTTACAGACAATCACTATATAAATTAAAAATTACACAAATACAAATCACA10.8928571428571428No Hit
CAGCGGACGCGGCGGGCGGTACTCCGTGGGTGGAGCTCGGGGGGCGGGGGGGCATTAAAAAAAAGAGGGGGGGGG10.8928571428571428No Hit
GAACTTGTAACCTCCCATGTACTCTGCGTTGATCTGTCTCTTATACACATCTGACGCTGCCGACGATCGCATAAG10.8928571428571428No Hit
GAACATAACAAATAAATTATTATATATTAATATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8928571428571428No Hit
ATCACCCGCTGTGGCCGGACTTTCCATTCCGTTCTGATATACAAACTGCTAAAACGCGAGGGCTACTCCGATTTC10.8928571428571428No Hit
TGGCCAAGCTGCTGGCCGGTTTCAAGAACGACAAGCTGGACGGCGTGGTGCTGGACCTGCGCCTGTCTCTTATAC10.8928571428571428No Hit
GTTGTGTAGCAGGAATAAATTAAAATATTATTTTTTAATTATTTATAAGATATAGTCTGTCTCTTATACAAATCT10.8928571428571428No Hit
CAAAATCTCACCACAATTCACACAGAGATAGTCTGGAACTTGTAACCTCCCATGTACTCTGCGTTGATACCCTGT10.8928571428571428No Hit
GTTTGTAGATCAGCTTCCTTGCCTGCATGTCAGTTTGCACATGACCAAAATTATGGGATGAGTCTCCAAATCTGT10.8928571428571428No Hit

[FAIL]Adapter Content

Adapter graph