FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002296481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002296481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101
Sequences flagged as poor quality0
Sequence length75
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT87.920792079207921No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTCTGCCCCTGCGCACATG87.920792079207921No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT76.9306930693069315No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGTCGCTCTGTCCACTCTTAACGGCCCC54.9504950495049505No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCTG54.9504950495049505No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT32.9702970297029703No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGATGCCGAT32.9702970297029703No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAAAAAACGGAGTGGTGCCATTCAGGTA21.9801980198019802No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGGGGGGCCCCCTCAGTGA21.9801980198019802No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGAACGTCTGTGTTGTTATCAGCCAAGC21.9801980198019802No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGTCCTGCTTGAGGATGGGTAGGGGGAT10.9900990099009901No Hit
ACATCAACCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAGCTGGAGGACCGAATTGACTACCTGA10.9900990099009901No Hit
TCTCGTGCTCGCAGATGCCTCCCAGCGTCTCCGGGGCGGCAGGTTGGGCGGGCGGCTGCGCGGGGCCCGCGCCCC10.9900990099009901No Hit
GCACAGGTCGTATACGCCTTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGNGAAGGGGCCCTG10.9900990099009901No Hit
AAAGCAATCAAGGCCAGTCTACCCTGCAGCACTTGCCACCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT10.9900990099009901No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCCAATTTCAGCTCCATTGGGATCATG10.9900990099009901No Hit
GGCCAGGGTGGACATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGTCCAGCTTGAGGATGGGTAGGGGGAT10.9900990099009901No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCCAATTTCAGCTCNATTGGGATCATG10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGACCTTGCAGCCTTCCCATAAGCAGCACTCTGCACAGAATCATCCAA10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGGCGGTAGTACCTGTGCACCACTGCTGCCCCTGCGCACATG10.9900990099009901No Hit
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACAAGGTCCGGTCGGTAGTACCTGTGCACCCCTTCTGCCCCAGCGCACCTG10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGACACCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT10.9900990099009901No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCCTTTTCAGCAAACACTCGGAAGAAGTAGG10.9900990099009901No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGTGTGCGGGGGGCCCCCTCAGTGA10.9900990099009901No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACGCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCGG10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCGTCCCATAAGCAGCACTCTGCACAGCATCATCCCT10.9900990099009901No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGGCGCGAAGGGGCCCTG10.9900990099009901No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGTTGCGTGGGGCCCCCTCATTGA10.9900990099009901No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTTTCAGAATGGCCGGGATGCTGGTGGC10.9900990099009901No Hit
TAAAATATTAGCCCTCCCGCACTCACCAGATCCGGTAGGTAGTAAATGTGCAACACTTATGCCCCTGCGCCCATA10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTAGCCACCTTCCCATAAGCAGCACTCTGCACAGCATCAGCCAT10.9900990099009901No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCCAATTTCAGCTCCATTGGGAGCATG10.9900990099009901No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCCCGGGTGCGTGGGGCCCCCTCAGTGA10.9900990099009901No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGAACGTCTGTGTTGTTATCAGCCAAGT10.9900990099009901No Hit
TAAAATAGTAGCTCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTTCACCACTTCTGCCCCTGCGCACATG10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTATGCCCCTGCGCACATG10.9900990099009901No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCGCTT10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGTCACCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT10.9900990099009901No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTACCCCTCCTTGGTCACTGTCGCTCTGTCCACNCTTAACGGCCCC10.9900990099009901No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGGTGGCAGAATGGCCGGGATGCTGGTGGC10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTGGTACCTGTGCACAACTTCTGCCCCTGCGCCAATG10.9900990099009901No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGCAGCTCGCGGCCGTCCAGCACGGCCC10.9900990099009901No Hit
ATGCTCAGTTGTAGGTGATTCTCACTTTACAACTTTTGATGGTCGACATTATTCTTTTATTGGCATGTGCCAATA10.9900990099009901No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCGCCTGGCAGGTCGCGAAGGGGCCCGG10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAGCAGCACTCTGCACAGCATCATACAT10.9900990099009901No Hit
TTTCAGGTCAGAGCTGAAGTCCTAACGACGTTTGCCCTCTGTGGATTTGCCACTTTCAGCTCCATTGGGATCATG10.9900990099009901No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGACAAACCGGAGTGGTGCCATTCAGGTA10.9900990099009901No Hit
TAAAATAGTAGCACTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGAACCAATTCTGCCCCTGCGCACATG10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCAGGTCGGTAGTACCTGTGCACCACTTCTGCCCCTGCGCACATG10.9900990099009901No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTTTCAGCACACACTCGGAAGAAGTAGG10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCTGTCTGTAGTACCTGTGCACCACTTCTTCCCCTGCGCACATT10.9900990099009901No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCAACCACAGCAATAAGCTGGAGGACCGCATTGACTACCTGA10.9900990099009901No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCGCTTGGCCTTGTCGCGGCTCTTG10.9900990099009901No Hit
CAACCAAAAGAACAGCCTGTCTGATACACATCTCCGATCCCACGAGACCCCATTCACTCTCGTATGCCGTCTTCT10.9900990099009901TruSeq Adapter, Index 15 (95% over 22bp)
CAAGCAATCAAGGCCAGTCTACCCTGCAGACCTTGCCGCCTTCCCAGAAGCAGCACTCTGAAAAGCATCATCCAT10.9900990099009901No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTGCACGCTTCTTTTTTCTTCATGGCAGTATTAT10.9900990099009901No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTGTCTCCCCAATGAGACGAACGTCTGTGTTGTTATCAGCCAAGT10.9900990099009901No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCGTGTAGAGCAGCGTGAAGCTGCCGAT10.9900990099009901No Hit
GTCCAGGGTGGGATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGTCCTACTTGAGGATGGGTAGGGGGATC10.9900990099009901No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAGCTGGAGGACCTCATTGACTACCTGA10.9900990099009901No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTTTCAGCAAACACTCGGAAGAAGTAGG10.9900990099009901No Hit
GTAAAAGTTGAAATGTCAGGGCCAGTCACAGTTTTGACTAGACAAAACCACTGCTGCAGAACTTGATAGCCACAC10.9900990099009901No Hit
CAAGCAATCAAGGCCAGTATACCCTGCAGCCCTTACCGCCTTCCCATAAGCAGCACTCTGCACAGCATCATCCAT10.9900990099009901No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTGCACCACTTCTGCCCCTGCGCACATT10.9900990099009901No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCC10.9900990099009901No Hit

[OK]Adapter Content

Adapter graph