FastQCFastQC Report
Wed 31 Aug 2022
EGAF00002296482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002296482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45
Sequences flagged as poor quality0
Sequence length75
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT2760.0No Hit
CTTCTTGTTTTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGAGCACACGAGACATCATCTCATCTCGT12.2222222222222223No Hit
GTCATTGTCACTGGTCATCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT12.2222222222222223No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGGGTCTCCACGTTGAGCTGCTTGGCCTTGTCGCGGCGCTT12.2222222222222223No Hit
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTTCGCTGCTTTGCCTTGTCGCGGCTCTT12.2222222222222223No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCTGAGCCCACGAGACATCATCTCATCTCGTATGACGTCTT12.2222222222222223No Hit
GGCATTGTCACTGGTCAGCGCCAGCACCTTCTGCTGCGTCTCCAAGTTGCGCTTCTTGGCCTTGTAGCAGCTCTT12.2222222222222223No Hit
GTCATTGTCACTGGTCAGCTCCAGCGCCTTCTGCTGCGTCTCCACATTGCGCTGCTTGGCCTTATCGCGGCTCTT12.2222222222222223No Hit
GTCATTGTCACTGGTCAGCTCGAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT12.2222222222222223No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGTCTTGTCGCGGCTCTT12.2222222222222223No Hit
GTCATTTTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACTTTGCGCTGCTTGGCCTTTTCGCTGCTCTT12.2222222222222223No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACATCATCTCATCTCGTATGCCGTCTT12.2222222222222223No Hit
GCACAGGTCGTATACGCATCTCCGAGCCCACGAGACAGCATCTCATCTCGTATGCCGTCTTCTGCTTGAAAAAAA12.2222222222222223Illumina PCR Primer Index 10 (96% over 27bp)
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCAGCTCTT12.2222222222222223No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCTGCTCTTT12.2222222222222223No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCGGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT12.2222222222222223No Hit
GTCATTATCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT12.2222222222222223No Hit
GTCATGGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTGGGCCTTGTCGCGGCTCTT12.2222222222222223No Hit
GCCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCGCTGCTTGGCCTTGTCGCGGCTCTT12.2222222222222223No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)