FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002296518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002296518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences342
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGC5716.666666666666664No Hit
GTAGTGCTGCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG339.649122807017543No Hit
GCACAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG339.649122807017543No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC288.187134502923977No Hit
TAAAATAGTAGCCCTCCCGCACTCACCAGGTCCGGTCGGTAGTACCTGTG216.140350877192982No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGGCAGGTGGGGCG195.555555555555555No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTTGGTCACTGT144.093567251461988No Hit
CAGTGACATGTATTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCT113.216374269005848No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCACGAGAC102.923976608187134No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAG82.3391812865497075No Hit
GACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGG72.046783625730994No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCGCAGCAATAAG61.7543859649122806No Hit
CTTTGACAGCATCACGAGTTTCACCGGGATCACCAATGCCATACTCATTT51.461988304093567No Hit
CAAGCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC51.461988304093567No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTGCAAT51.461988304093567No Hit
CAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACGAGAC41.1695906432748537No Hit
GTTTCCAGGTCAAGGGTAACGGAGCGTGGACCAAGTCCCGCGTCTCCTCC41.1695906432748537No Hit
AAAGTCTCTGACGTGGATGAGTTTGGGAGTGTGGAAGCTCAGGAGGAGAA30.8771929824561403No Hit
GTCCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT30.8771929824561403No Hit
CAAGCAATCAAGGCCAGTCTCTTATACACATCTCCGAGCCCACGAGACAA20.5847953216374269No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCCACGTATATCTCGTATGCCG20.5847953216374269No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGTGTCTCCACGTTGC20.5847953216374269No Hit
GGCTGTGGTGTGAGTCCGGGGGGCGGCCGTAGCGCGCCATTTGCACCCGC20.5847953216374269No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGATGCACAATCTCGT20.5847953216374269No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACCCACGTATATCTCGT20.5847953216374269No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATGTCCGAGCCCACGAGAC10.29239766081871343No Hit
GAAGATGCTGATGCGGATCATGAGCTTCTCCAGCTTGTCTGTCTTGGTGC10.29239766081871343No Hit
CTGGAATCCCGAGCCCACGAGACATATCTCATCTCGCATGCCGGCTTCTG10.29239766081871343No Hit
GCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGCA10.29239766081871343No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCATCCGC10.29239766081871343No Hit
TAAAATAGTAGCCCTCCCGCACTCACAAGGTCCGGTCGGTAGTACCTGTG10.29239766081871343No Hit
GTCATTGTCACTGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTTGCG10.29239766081871343No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACGATGCACAATCTCGTATGCCG10.29239766081871343No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCCTAGCCCTCCTAGGTCACTGT10.29239766081871343No Hit
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACAAGCGTGTATCTCGT10.29239766081871343No Hit
GTCCAGGTCGTATACGCATTGGCGGAAGTACTCAGAGGGACTCAGCACCG10.29239766081871343No Hit
CAAGCCATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAG10.29239766081871343No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCTTCTCCACGTTGC10.29239766081871343No Hit
GTAGTGCTTCTCGTACAGGTAGCAGGCCACCACAATGCTGGCGGGGACCG10.29239766081871343No Hit
GGCTGTGGTGTGAGTCCGGGTGGCGGCCGTAGCGCACCATTTGCACCCGC10.29239766081871343No Hit
ACACTTGGCCTGGAGTACGGTGATGGCGTTGAGGCTGTGGTAGGGCCGGG10.29239766081871343No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCCTG10.29239766081871343No Hit
TTTCAGGTAGGTGGACCTTTCTCTTATACACATCTCCGAGCCCACGAGAC10.29239766081871343No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCTTCTGCTGCGTCTCCACGTCGC10.29239766081871343No Hit
CAAGCAATCAAGGCCAGTCTACCTTGCAGCCCTTGCCACCTTCCCATAAG10.29239766081871343No Hit
CAGTGACATGTTTCCCCCTCTTACCTTAAGGCTGTGATTCTTTCTCTCTT10.29239766081871343No Hit
CATAGTTACCTTCTCCGAGCCCACGAGACATCATCTCATCTCGTATGCCG10.29239766081871343No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGGATAACAATCTCGT10.29239766081871343No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTTGGAAGATCTCGT10.29239766081871343No Hit
AAAGTCTCTGACCAATCTGTCTCTTATACACATCTCCGAGCCCACGAGAC10.29239766081871343No Hit
GGCTGTGGTGTGAGTCGGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC10.29239766081871343No Hit
TCTCGTGCTCGCAGATGCCGCCCAGCGGCTCCGGGGCGACAGGTGGGGCG10.29239766081871343No Hit
TTTCAGGTAGGTGGACCTGTCTCTTATACACATCTCCGAGCCCAAGAGAC10.29239766081871343No Hit
CTTCTTGTTTTGGAGCACTCAGTTGTCTGTCTCTTATACACATCTCCGAG10.29239766081871343No Hit
CCTGACTCACGTTTCCGAGCCCACGAGACCATCGACCATCTCGTATGCCG10.29239766081871343No Hit
ACATCAGCCTCTTTATTCTCAGCATTGACAAAAGCCACCACAGCAATAAG10.29239766081871343No Hit
CAAGCAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCGCCTTCCCATAAG10.29239766081871343No Hit
TTTCAGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGC10.29239766081871343No Hit
CCTGACTCACGTTTCCTTATTGCTGGGATGTTCACAGAGCCAACGTCTTG10.29239766081871343No Hit
GTTTCCAGGTCAAGGGTAACGGAACGTGGACCAAGTCCCGCGTCTCCTCC10.29239766081871343No Hit
GAAGATGATGATTCTCTTGGAGGAAAGAACCAAATGAGTAAGAAAAGGAG10.29239766081871343No Hit
CTTCTTGTTTTCGGGACATGCTTCAGCCCTTAGCCCTCCTTGGTCACTGT10.29239766081871343No Hit
GTCCAGGGTGGGGCGGGAGGCTGCGCGGGGCCCGCGCCCCGGGGAAAGCC10.29239766081871343No Hit
ACATCAACCAAAAGAACAGCCTGTCTCTTATACACATCTCCGAGCCCACG10.29239766081871343No Hit
TTTCAGGGTGGGCATGGATTGCAGGGCCGCGGGCACGGGGGGCACTGCGT10.29239766081871343No Hit
CCTGACTCACATTTCCGAGCCCACGAGACGATGCACAACCCCGTATGCCG10.29239766081871343No Hit
CTTCAGTGGAACATTCAGTTGTCTGTCTCTTATACACATCTCCGAGCCCA10.29239766081871343No Hit
AACTGTAGCTTACACTGACTCCGAGCCCACGAGACGTGCATTCAACTCGT10.29239766081871343No Hit
GGTCATTGTCACTGGTCAGCTGTCTCTTATACACATCTCCGAGCCCACGA10.29239766081871343No Hit
CATAGTTACTTCTCCGAGCCCACGAGACAACCAACGATCTCGTATGCCGT10.29239766081871343No Hit
GTCATTGTCACTGGTCAGCTCCAGCACCGTCTGCTGCGTCTCCACGTTGC10.29239766081871343No Hit
AACTGTAGCTTACACTGACTCCGTGGAACAGTTTCTCCCCAATGAGACGA10.29239766081871343No Hit
GTCATTGTCACTGGTAAGGTCCAGCACCTTCTGCTGCGTCCCCACGTTGC10.29239766081871343No Hit
CAATCAAGGCCAGTCTACCCTGCAGCCCTTGCCACCTTCCCATAAGCAGC10.29239766081871343No Hit
CCTTTAACAAGTATGCCTGTCAGCACCACACTGGTGGCCACTTCTACAAT10.29239766081871343No Hit
GAAGATGCTGATTCTCTTGCAGGAACTCACCCACTCATCCTGCAAAGCTT10.29239766081871343No Hit
GGCTGTGGTGGGAGTCCGGGTGGCGGCCGTAGCGCGCCATTTGCACCCGC10.29239766081871343No Hit
CTTCTTGTTTTGGAGCACTCAGTTGTCTGTCTCTTATACAAATCTCCGAG10.29239766081871343No Hit
GCACAGGTCGTATACGCATTGGCGGACGTACTCAGAGGGATTCAGCACCG10.29239766081871343No Hit

[FAIL]Adapter Content

Adapter graph