FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7030698
Sequences flagged as poor quality0
Sequence length126
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA351070.4993387569769032No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTG341770.4861110518471992No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG275360.39165385855003304No Hit
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT144830.20599661655215457No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC126620.18009591650786308No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG112290.15971387193703954No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT109680.15600158049741292No Hit
GCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTGTGGAAAGGGA108080.15372584628154984No Hit
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT107070.1522892890577863No Hit
GGCGGACTTTGGAGTGGGAAGCGGGGAATGTCTACGTGCGTATGCACGTG81640.11611933836441275No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTTATTTCCAACGTTG78570.11175277333772551No Hit
GGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTGTGG78570.11175277333772551No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC78490.11163898662693233No Hit
GGCAGAGGTTGTGCTGGTTGTAGGAGCAGAGGTTGTGCTGGTGGTGGGAA76870.10933480573337098No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)