FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7101004
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTT310950.4378958243087878No Hit
GTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTGC284150.4001546823519604No Hit
GTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTC245390.3455708516711158No Hit
CTTTTCTTCCCCTTCCCCTTCTTTTCAATTTCTCCCACGTCAAGAGAAAA122970.17317269501608504No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG118140.16637083995446278No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGA105830.14903526318250207No Hit
AGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGG92380.13009427962581066No Hit
GGCACTTCTGTAGGGCTGGCATGAGTCAGTCAGTTCAAGACAACCTGAAG89640.1262356703361947No Hit
CAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCA87120.12268687639100048No Hit
GTTCAAGACAACTGGAAGGAGTTGAATAACATCTATCCAGTGAGTCCTGC84880.11953239288416118No Hit
AGTGAGTCCTGCAAGACTTCAGGCTCTTTCTCATCCAGCAGCTCCCTGCT83350.11737776798886466No Hit
AGTGAGTCCTGCAAGACTTCAGGCCCTTTCTCATCCAGCAGCTCCCTGCT80950.11399796423153684No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)