FastQCFastQC Report
Fri 31 May 2024
EGAF00002300358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14833766
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT611350.4121340460676001No Hit
CCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA216550.1459845058901428No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA204000.13752407851114815No Hit
GCAGACACGAGGCCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTAC172370.11620110496552258No Hit
CCAGCTTTATTTCCAACGTTGTGGAAAGGGACTTGTACATCATGGGGCAG151020.10180826635663527No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)