FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002300360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11910477
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG256100.2150207754063922No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT216040.18138652213509165No Hit
GTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTGC198270.16646688457565553No Hit
GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAG190080.15959058566672016No Hit
GTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACC162820.13670317318105732No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTG154480.12970093473166525No Hit
CTTTGATCTTCTTCCCCTTCTTTTCTTCCCCTTCCCCTTCTTTTCAATTT138480.11626738374961808No Hit
GGCGGACTTTGGAGTGGGAAGCGGGGAATGTCTACGTGCGTATGCACGTG137810.11570485380224485No Hit
GTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTC129750.1089377024950386No Hit
GTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCAGGA123830.10396728863168116No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)