FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002300361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11910477
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT261800.2198064779437465No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT203050.17048015793154214No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA198750.16686989110511696No Hit
CAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATC149880.1258387888243267No Hit
GTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAG138750.11649407492244014No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA134210.11268230483128426No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)