FastQCFastQC Report
Fri 31 May 2024
EGAF00002300363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3895775
Total Bases487.2 Mbp
Sequences flagged as poor quality0
Sequence length101-126
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT66430.17051806123300242No Hit
CAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATC39430.10121221066411691No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG39070.10028813265653175No Hit

[FAIL]Adapter Content

Adapter graph