FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002300367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3780065
Sequences flagged as poor quality0
Sequence length101-126
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA228900.6055451427422545No Hit
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC137870.36472917793741644No Hit
CCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCAC137870.36472917793741644No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATC134950.35700444304529155No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCAC112330.29716420220287215No Hit
CACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC97930.25906961917321525No Hit
CCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC97510.2579585271681836No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACCAC86650.2292288624666507No Hit
CACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC85030.2249432218758143No Hit
CCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC83270.2202872172833007No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCA81310.2151021212598196No Hit
CCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCACCACTAC81100.21454657525730378No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCA78490.20764193208317847No Hit
CGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACA76730.20298592749066485No Hit
CCCATCACCACCACCACCACGGTGACACCAACCCCAACACCCACCGGCAC70160.1856052739833839No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACCACGGTGACCCCA68060.18004981395822559No Hit
CAACCTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACA64340.1702087133422309No Hit
CCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC59700.1579337921437859No Hit
CCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACC58690.15526188041740024No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAAC58380.15444178869940067No Hit
CCCACCGGCACACAGACCCCAACAACGACACCCATCAGCACCACCACCAC57610.15240478669017596No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATC57550.15224605926088572No Hit
CTTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCT57400.15184924068766015No Hit
CACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGC56380.1491508743897261No Hit
CACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCA55720.1474048726675335No Hit
CCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCACCACCAC55350.1464260535202437No Hit
CACAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCA54170.1433044140775357No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCA53400.141267412068311No Hit
CCCATCTCCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC52680.13936268291682816No Hit
CAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACC52190.1380664089109579No Hit
CATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACAC51670.13669077119044248No Hit
CCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCA50750.1342569506079922No Hit
CATCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCC49510.13097658373599394No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACCACGGTGACCCCAAC48850.12923058201380136No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA48830.1291776728707046No Hit
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT48820.12915121829915624No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATC46760.12370157656019143No Hit
CAGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATAT45830.12124130140619274No Hit
CCGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCAC45500.12036830054509644No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCAC44630.118066752820388No Hit
CGACACCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACC43400.11481284051993815No Hit
CAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCAAC42960.11364883937180974No Hit
CAACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCC42160.11153247364793992No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC42060.11126792793245618No Hit
CCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACACCCATC41740.11042138164290825No Hit
TGTTATTCGACTCCTTCAGGTTATCTTGAACTGCCTGACTTAGGCCAGCC41510.10981292649729568No Hit
CAGACCCCAACAACGACACCCATCAGCACCACCACCACGGTGACCCCAAC40110.10610928648052348No Hit
CCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCAC39810.10531564933407231No Hit
CCCATCACCACCACTACGGTGACCCCAACCCCAACACCCACCAGCACACA39770.10520983104787882No Hit
CGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACC39360.10412519361439551No Hit
CATCGACACCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCC39220.1037548296127183No Hit
GCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACC38570.10203528246207406No Hit
CCCACCGGCACACAGAGTACAACCCTGACACCCATCACCACCACCACCAC37970.10044800816917168No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)