FastQCFastQC Report
Thu 8 Sep 2022
EGAF00002300430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6875565
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA157100.2284903131597185No Hit
GTAGGAATATGCAGGCGCAGACACGAGGCCCAGCTTCATCTTCAACGTTG106680.15515815791138618No Hit
GGCAGCTCCACAGATAGGACTCATGTCCTGAGCAGCGCACATCATCCAGG89620.13034565159372358No Hit
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT87330.12701501622048517No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC83030.12076098473361825No Hit
GCCAAGTGTCTGGGCTGGGTGTCGGCTGGGACTGGGAAGCTGAGCAGATG78450.11409971398714143No Hit
GGCAGAGGTTGTGCTGGTTGTAGGAGCAGAGGTTGTGCTGGTGGTGGGAA74560.10844199713041765No Hit
GTCGGCTGGGACTGGGAAGCTGAGCAGATGACACCAGCGTCTTCATGATG70450.10246430656971463No Hit
GTTGTGCTGGTGGTGGGAACAGGGCTGGGAGTAGTTCCAGGACCAGAGGT70190.10208615582864827No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)