FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14468780
Sequences flagged as poor quality0
Sequence length126
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA622030.4299118515866576No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACAC422110.2917384879720336No Hit
CCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCAC354090.24472692238046329No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCA345080.23849972146926002No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT342640.23681333187732484No Hit
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC335140.2316297573119503No Hit
CACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC334080.230897145440044No Hit
CACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCA308420.2131624089937092No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCA302160.20883585208980993No Hit
CACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC279150.1929326453232408No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACAC245080.16938539393093266No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCA233720.1615340063225787No Hit
ACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCC229930.1589145733088761No Hit
CAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAAC228710.15807137851290848No Hit
CAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCAAC211860.14642561432270032No Hit
CCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC201740.1394312443758216No Hit
ATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACA198040.1368740142569035No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACAC195480.1351046874719223No Hit
ACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCC193530.1337569580849249No Hit
CCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCACCACCAC189130.13071592767323853No Hit
ACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCAA188080.12999022723408607No Hit
ACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGACCCCAA187610.12966538989465592No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT181880.1257051389267098No Hit
CCCATCACCACCACCACCACGGTGACACCAACCCCAACACCCACCGGCAC165900.11466066938608509No Hit
CATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACAC164630.11378291742634832No Hit
GGCACACAGACCCCAACCACGACACCCATCACCACCACCACCACGGTGAC162490.11230387081702811No Hit
ATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACA161530.11164037327266016No Hit
CACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAA160220.11073497558190808No Hit
GGCACACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGAC158220.10935268903114154No Hit
CCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCAC156020.10783217382529835No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACAC153840.10632548148496279No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)