FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6859068
Sequences flagged as poor quality0
Sequence length126
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT191940.2798339366222933No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG83160.12124096160003078No Hit
AGAAGATCAAAACCCACCATGCCCCAGGCTCAGCAGGGAGCTGCTGGATG71500.10424156751325397No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)