FastQCFastQC Report
Fri 31 May 2024
EGAF00002300507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7289477
Total Bases918.4 Mbp
Sequences flagged as poor quality0
Sequence length126
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCATAG130550.17909378135084314No Hit
TGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG116430.15972339305000893No Hit
GACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTG85310.11703171571842534No Hit

[FAIL]Adapter Content

Adapter graph