FastQCFastQC Report
Fri 31 May 2024
EGAF00002300508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7520048
Total Bases947.5 Mbp
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG171830.22849588194117912No Hit
TGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGGCA105470.14025176435044032No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA99390.1321667095741942No Hit

[FAIL]Adapter Content

Adapter graph