FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7520048
Sequences flagged as poor quality0
Sequence length126
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN487430.6481740542081647No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC113700.1511958434307866No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT76280.10143552275198243No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)