FastQCFastQC Report
Fri 31 May 2024
EGAF00002300515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15760451
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT511030.32424833527923785No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT406710.25805733604958386No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACT233640.14824448868880719No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA172910.10971132742330787No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)