FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002300590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10460790
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACT188350.18005332293258922No Hit
GGGGTCTGTGTGCCGGTGGGTGTTGGGGTTGGGGTCACCGTAGTGGTGGT154570.1477613067464312No Hit
GGGGTCTGTGTGCCGGTGGGTGTTGGGGTTGGGGTCACCGTGGTGGTGGT154340.14754143807494463No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC138720.1326094874287697No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC133830.1279348882828161No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA131660.12586047516487758No Hit
GTGGTGATGGGTGTCGATGTTGGGGTCTGTGTGCCGGTGGGTGTTGGGGT131340.12555457092628758No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT126450.120879971780334No Hit
GTTGGGGTCTGTGTGCCGGTGGGTGTTGGGGTTGGGGTCACCGTAGTGGT125880.12033507985534553No Hit
GTCGATGTTGGGGTCTGTGTGCCGGTGGGTGTTGGGGTTGGGGTCACCGT120970.11564136169448005No Hit
GTTGGGGTCTGTGTGCCGGTGGGTGTTGGGGTTGGGGTCACCGTGGTGGT111930.10699956695431226No Hit
GTGGAGATGGGTGTCGGGGTTGGGGTCTGTGTGCCGGTGGGTGTTGGGGT111090.10619656832801347No Hit
GTGCCGGTGGGTGTTGGGGTTGGGGTCACCGTGGTGGTGGTGGTGATGGG106770.10206686110704832No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)