FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002300591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10460790
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT382260.36542173201067985No Hit
GTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA357510.3417619510572337No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT215660.20616033779475548No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA165620.15832456248524251No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA132690.1268451044328392No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACAC113150.10816582686393666No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG107150.10243012239037395No Hit
GGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA106770.10206686110704832No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)