FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002300597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10289018
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT193390.18795768459147413No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA114090.11088521761746359No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT108310.10526757752780684No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)