FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002300608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8747132
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG188350.2153277211319093No Hit
CTCGTCTTGCTGTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT185810.21242391220345136No Hit
CTCTGCTCCTCTCCAGAAGGTACCACCACAGCTGCCCACTTCTGGAAGGT131510.1503464221187013No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG119970.13715352643586493No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT92560.1058175411094745No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT92440.1056803532860828No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)